Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MB380_RS17410 Genome accession   NZ_CP092074
Coordinates   4098716..4099783 (+) Length   355 a.a.
NCBI ID   WP_253528969.1    Uniprot ID   -
Organism   Emticicia sp. 21SJ11W-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4093716..4104783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MB380_RS17390 (MB380_17390) - 4095062..4096228 (+) 1167 WP_253528942.1 amidohydrolase family protein -
  MB380_RS21865 - 4096225..4096356 (+) 132 WP_256503996.1 hypothetical protein -
  MB380_RS17395 (MB380_17395) - 4096408..4097493 (-) 1086 WP_253528950.1 hypothetical protein -
  MB380_RS17400 (MB380_17400) - 4097896..4098435 (+) 540 WP_253528954.1 SRPBCC family protein -
  MB380_RS17405 (MB380_17405) - 4098483..4098668 (+) 186 WP_253528957.1 hypothetical protein -
  MB380_RS17410 (MB380_17410) recA 4098716..4099783 (+) 1068 WP_253528969.1 recombinase RecA Machinery gene
  MB380_RS17415 (MB380_17415) - 4099858..4100535 (-) 678 WP_253528983.1 pseudouridine synthase -
  MB380_RS17420 (MB380_17420) - 4100532..4102091 (-) 1560 WP_253528986.1 NFACT RNA binding domain-containing protein -
  MB380_RS17425 (MB380_17425) - 4102169..4102834 (-) 666 WP_253528989.1 family 16 glycoside hydrolase -
  MB380_RS17430 (MB380_17430) - 4102850..4103677 (-) 828 WP_253528995.1 alpha/beta fold hydrolase -
  MB380_RS17435 (MB380_17435) - 4103688..4104338 (-) 651 WP_253528998.1 NADPH-dependent F420 reductase -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38247.01 Da        Isoelectric Point: 4.9726

>NTDB_id=655802 MB380_RS17410 WP_253528969.1 4098716..4099783(+) (recA) [Emticicia sp. 21SJ11W-3]
MAAEKENNSDKLKILQTTMEKIDKTFGKGTIMRLSDTKVLEIPSISTGSLGLDLALGVNGFPKGRIIEIYGPESSGKTTL
AMQAIAEAQKSGGIAAFIDAEHAFDRVYAQKLGIDTKNLLISQPDYGEQALEIAEHLISSGAIDICVIDSVAALVPKAEL
EGEMGDSKMGLQARMMSQAMRKLTGTINKTGCCCIFINQLRDKIGVMFGNPETTTGGNALKFYASVRIDIRRIGAIKDGD
EVLGNRTRVKVVKNKVAPPFKVVEFDILYGQGVSKAGEILDLAVDLEIVKKAGSWFSYNGSKLGQGRDGVRDMLKDNPEL
LAELEEKIKATVAVDADALMDTKPGDQDGLVDKDE

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=655802 MB380_RS17410 WP_253528969.1 4098716..4099783(+) (recA) [Emticicia sp. 21SJ11W-3]
ATGGCAGCAGAAAAAGAAAACAACAGCGACAAATTGAAGATTCTCCAGACGACCATGGAGAAAATAGATAAAACCTTTGG
TAAAGGTACAATTATGCGCCTGAGCGATACTAAAGTTTTAGAGATTCCATCTATTTCTACAGGTTCTCTTGGCCTTGACC
TTGCCCTGGGCGTGAATGGTTTTCCGAAAGGACGTATCATTGAAATTTATGGGCCTGAATCATCAGGTAAAACAACCCTT
GCCATGCAGGCAATTGCCGAAGCGCAAAAAAGCGGTGGCATAGCCGCCTTTATTGATGCAGAGCATGCGTTCGACCGAGT
TTATGCACAGAAACTGGGCATTGATACCAAAAACCTGCTTATATCTCAGCCAGATTACGGCGAGCAGGCATTGGAAATTG
CCGAACACCTGATTAGCTCAGGCGCAATTGATATTTGCGTGATTGACTCGGTAGCGGCTTTGGTGCCAAAAGCTGAGTTG
GAAGGCGAAATGGGCGACAGCAAGATGGGTCTGCAGGCACGTATGATGTCTCAAGCCATGCGTAAACTGACAGGTACCAT
TAATAAAACGGGCTGTTGCTGCATATTCATCAACCAGTTGCGTGATAAAATCGGTGTCATGTTCGGTAACCCTGAAACAA
CCACCGGTGGTAACGCACTTAAATTCTATGCTTCGGTAAGGATTGATATCCGCCGTATAGGAGCCATAAAAGACGGCGAC
GAAGTGCTAGGTAACCGCACAAGAGTGAAAGTGGTGAAAAACAAAGTGGCGCCACCGTTTAAAGTTGTAGAATTTGATAT
TCTTTACGGCCAGGGGGTTTCTAAAGCAGGCGAAATACTTGACCTTGCCGTAGACCTGGAAATTGTTAAAAAAGCAGGAT
CATGGTTCTCTTATAATGGCAGTAAATTAGGCCAGGGTCGCGACGGCGTAAGAGATATGCTGAAAGATAACCCTGAGCTA
TTGGCTGAGCTGGAAGAGAAAATCAAGGCAACTGTAGCCGTTGACGCTGATGCATTGATGGATACCAAACCCGGCGACCA
GGATGGTTTAGTTGATAAAGACGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(13-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

71.341

92.394

0.659
  recA Neisseria gonorrhoeae MS11

62.647

95.775

0.6
  recA Neisseria gonorrhoeae MS11

62.647

95.775

0.6
  recA Neisseria gonorrhoeae strain FA1090

62.647

95.775

0.6
  recA Acinetobacter baylyi ADP1

61.272

97.465

0.597
  recA Ralstonia pseudosolanacearum GMI1000

67.093

88.169

0.592
  recA Glaesserella parasuis strain SC1401

60.29

97.183

0.586
  recA Acinetobacter baumannii D1279779

63.975

90.704

0.58
  recA Pseudomonas stutzeri DSM 10701

61.468

92.113

0.566
  recA Vibrio cholerae strain A1552

62.422

90.704

0.566
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.422

90.704

0.566
  recA Helicobacter pylori 26695

60.36

93.803

0.566
  recA Helicobacter pylori strain NCTC11637

61.656

91.831

0.566
  recA Bacillus subtilis subsp. subtilis str. 168

59.337

93.521

0.555
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.878

92.676

0.555
  recA Streptococcus mitis NCTC 12261

56.977

96.901

0.552
  recA Streptococcus mitis SK321

59.271

92.676

0.549
  recA Lactococcus lactis subsp. cremoris KW2

56.851

96.62

0.549
  recA Streptococcus pyogenes NZ131

58.967

92.676

0.546
  recA Streptococcus pneumoniae D39

58.485

92.958

0.544
  recA Streptococcus pneumoniae TIGR4

58.485

92.958

0.544
  recA Streptococcus pneumoniae Rx1

58.485

92.958

0.544
  recA Streptococcus pneumoniae R6

58.485

92.958

0.544
  recA Streptococcus mutans UA159

57.447

92.676

0.532
  recA Latilactobacillus sakei subsp. sakei 23K

58.75

90.141

0.53
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.099

91.268

0.521