Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HP572_RS14680 Genome accession   NZ_CP092070
Coordinates   3260825..3261898 (-) Length   357 a.a.
NCBI ID   WP_240583593.1    Uniprot ID   -
Organism   Pectobacterium sp. PL64     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3255825..3266898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP572_RS14665 (HP572_14665) csrA 3257010..3257195 (-) 186 WP_005972168.1 carbon storage regulator CsrA -
  HP572_RS14670 (HP572_14670) alaS 3257519..3260146 (-) 2628 WP_240583592.1 alanine--tRNA ligase -
  HP572_RS14675 (HP572_14675) recX 3260285..3260779 (-) 495 WP_205554827.1 recombination regulator RecX -
  HP572_RS14680 (HP572_14680) recA 3260825..3261898 (-) 1074 WP_240583593.1 recombinase RecA Machinery gene
  HP572_RS14685 (HP572_14685) pncC 3262006..3262500 (-) 495 WP_240583594.1 nicotinamide-nucleotide amidase -
  HP572_RS14690 (HP572_14690) - 3262735..3263070 (-) 336 WP_039536292.1 hypothetical protein -
  HP572_RS14695 (HP572_14695) - 3263550..3264038 (+) 489 WP_240583595.1 SRPBCC family protein -
  HP572_RS14700 (HP572_14700) - 3264120..3264794 (+) 675 WP_240583596.1 MarC family NAAT transporter -
  HP572_RS14705 (HP572_14705) - 3264963..3266561 (+) 1599 WP_240583597.1 sensor domain-containing diguanylate cyclase -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38246.71 Da        Isoelectric Point: 5.0716

>NTDB_id=655740 HP572_RS14680 WP_240583593.1 3260825..3261898(-) (recA) [Pectobacterium sp. PL64]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINIHGELVDLGVKHKLIEKAGAWYSYNGDKIGQGKANACNYLKENPAIAAEL
DKKLREMLLHKGNELTPAAAGNSHDEDEFAGEGNEEF

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=655740 HP572_RS14680 WP_240583593.1 3260825..3261898(-) (recA) [Pectobacterium sp. PL64]
ATGGCTATTGATGAGAACAAACAAAAAGCACTTGCGGCAGCACTGGGTCAAATCGAAAAGCAATTCGGTAAAGGTTCTAT
CATGCGGTTGGGCGAGGATCGCTCAATGGATGTTGAAACCATTTCTACGGGCTCTTTGTCCCTGGATATCGCTTTGGGTG
CCGGTGGTTTACCGATGGGGCGTATCGTTGAGATTTATGGCCCAGAATCTTCCGGTAAAACAACGCTGACCTTACAGGTT
ATTGCTGCCGCTCAGCGCGAAGGCAAAACGTGTGCGTTTATCGATGCTGAGCATGCGCTGGATCCGATTTATGCGAAAAA
GCTGGGTGTAGATATCGATAACCTGCTGTGTTCTCAGCCGGATACTGGCGAGCAAGCGTTGGAGATCTGTGATGCACTAA
CGCGCTCTGGCGCTGTTGACGTTATCATCGTCGACTCCGTTGCGGCACTGACGCCGAAAGCAGAAATTGAAGGTGAAATC
GGCGACTCCCACATGGGGTTGGCTGCACGTATGATGAGCCAGGCTATGCGTAAACTGGCGGGTAACCTGAAGCAAGCCAA
TACGCTGCTGATCTTCATTAACCAGATTCGTATGAAAATCGGTGTGATGTTCGGTAACCCTGAAACCACGACCGGTGGTA
ACGCACTGAAGTTTTACGCCTCTGTTCGTCTGGATATTCGTCGTACTGGCGCAATCAAGGAAGGCGAAGAAGTTGTCGGC
AGCGAAACCCGCGTGAAAGTCGTGAAGAATAAAGTGGCAGCACCGTTCAAACAGGCTGAATTCCAAATTCTGTACGGCGA
AGGCATCAATATCCACGGTGAGCTGGTCGATCTGGGTGTGAAACACAAACTGATCGAAAAAGCCGGTGCCTGGTATAGCT
ATAACGGCGACAAGATTGGTCAGGGTAAAGCGAATGCCTGTAATTACCTGAAAGAGAACCCGGCGATTGCTGCGGAACTG
GATAAGAAATTGCGTGAAATGCTGCTGCACAAAGGCAATGAGCTGACGCCAGCCGCTGCTGGAAATAGCCATGACGAAGA
TGAATTCGCCGGTGAAGGCAACGAAGAGTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

83.38

99.44

0.829
  recA Vibrio cholerae O1 biovar El Tor strain E7946

83.38

99.44

0.829
  recA Pseudomonas stutzeri DSM 10701

74.631

94.958

0.709
  recA Acinetobacter baylyi ADP1

71.098

96.919

0.689
  recA Glaesserella parasuis strain SC1401

69.231

98.319

0.681
  recA Acinetobacter baumannii D1279779

73.03

92.437

0.675
  recA Neisseria gonorrhoeae MS11

69.632

91.317

0.636
  recA Neisseria gonorrhoeae MS11

69.632

91.317

0.636
  recA Neisseria gonorrhoeae strain FA1090

69.632

91.317

0.636
  recA Ralstonia pseudosolanacearum GMI1000

70.096

87.115

0.611
  recA Streptococcus pneumoniae D39

60.282

99.44

0.599
  recA Streptococcus pneumoniae TIGR4

60.282

99.44

0.599
  recA Streptococcus pneumoniae Rx1

60.282

99.44

0.599
  recA Streptococcus pneumoniae R6

60.282

99.44

0.599
  recA Helicobacter pylori strain NCTC11637

62.997

91.597

0.577
  recA Helicobacter pylori 26695

62.691

91.597

0.574
  recA Streptococcus pyogenes NZ131

62.462

91.036

0.569
  recA Streptococcus mitis NCTC 12261

62.848

90.476

0.569
  recA Streptococcus mitis SK321

62.848

90.476

0.569
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.299

93.838

0.566
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.774

91.597

0.566
  recA Lactococcus lactis subsp. cremoris KW2

62.539

90.476

0.566
  recA Streptococcus mutans UA159

61.846

91.036

0.563
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

91.036

0.56
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

89.916

0.557
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.896

91.317

0.538