Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | MCS25_RS04025 | Genome accession | NZ_CP092048 |
| Coordinates | 944399..945421 (+) | Length | 340 a.a. |
| NCBI ID | WP_004584116.1 | Uniprot ID | A0A0E2LLY6 |
| Organism | Porphyromonas gingivalis strain W50 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 906931..943693 | 944399..945421 | flank | 706 |
Gene organization within MGE regions
Location: 906931..945421
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MCS25_RS03835 (MCS25_03840) | - | 906957..907085 (-) | 129 | Protein_761 | DNA methylase | - |
| MCS25_RS03840 (MCS25_03845) | - | 907111..908192 (-) | 1082 | Protein_762 | IS5 family transposase | - |
| MCS25_RS03845 (MCS25_03850) | - | 908295..908798 (-) | 504 | Protein_763 | site-specific integrase | - |
| MCS25_RS03850 (MCS25_03855) | - | 909138..910665 (+) | 1528 | Protein_764 | helicase-related protein | - |
| MCS25_RS03855 (MCS25_03860) | - | 910775..911773 (-) | 999 | WP_010956139.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| MCS25_RS03860 (MCS25_03865) | - | 911758..912465 (-) | 708 | WP_005874356.1 | DUF6088 family protein | - |
| MCS25_RS03865 (MCS25_03870) | - | 912556..912864 (-) | 309 | WP_005874351.1 | helix-turn-helix domain-containing protein | - |
| MCS25_RS03870 (MCS25_03875) | - | 912852..914102 (-) | 1251 | Protein_768 | AAA family ATPase | - |
| MCS25_RS03875 (MCS25_03880) | - | 914209..915290 (+) | 1082 | Protein_769 | IS5 family transposase | - |
| MCS25_RS03880 (MCS25_03885) | - | 915315..915485 (+) | 171 | WP_080502141.1 | DNA methylase | - |
| MCS25_RS03885 (MCS25_03890) | - | 915720..916205 (+) | 486 | WP_005874045.1 | HU family DNA-binding protein | - |
| MCS25_RS03890 (MCS25_03895) | - | 916242..917024 (+) | 783 | WP_004584112.1 | DUF4393 domain-containing protein | - |
| MCS25_RS03895 (MCS25_03900) | - | 917526..918431 (+) | 906 | WP_005874039.1 | hypothetical protein | - |
| MCS25_RS03900 (MCS25_03905) | - | 918655..918879 (+) | 225 | WP_005874043.1 | helix-turn-helix transcriptional regulator | - |
| MCS25_RS03905 (MCS25_03910) | - | 918876..919211 (+) | 336 | WP_005874041.1 | HipA N-terminal domain-containing protein | - |
| MCS25_RS03910 (MCS25_03915) | - | 919201..920139 (+) | 939 | WP_010956143.1 | HipA domain-containing protein | - |
| MCS25_RS03915 (MCS25_03920) | - | 920209..920529 (+) | 321 | WP_043876418.1 | helix-turn-helix domain-containing protein | - |
| MCS25_RS03920 (MCS25_03925) | - | 920631..924065 (+) | 3435 | WP_250697966.1 | helicase-related protein | - |
| MCS25_RS03925 (MCS25_03930) | - | 924076..927474 (+) | 3399 | WP_010956144.1 | Eco57I restriction-modification methylase domain-containing protein | - |
| MCS25_RS03930 (MCS25_03935) | - | 927464..928063 (-) | 600 | WP_316896392.1 | TaqI-like C-terminal specificity domain-containing protein | - |
| MCS25_RS03935 (MCS25_03940) | - | 927983..928252 (+) | 270 | WP_230456014.1 | hypothetical protein | - |
| MCS25_RS03940 (MCS25_03945) | - | 928335..928955 (-) | 621 | WP_005874044.1 | master DNA invertase Mpi family serine-type recombinase | - |
| MCS25_RS03945 (MCS25_03950) | - | 929052..930182 (-) | 1131 | WP_004584862.1 | ISAs1-like element ISPg2 family transposase | - |
| MCS25_RS03950 (MCS25_03955) | - | 930319..931464 (+) | 1146 | WP_005874176.1 | ADP-ribosylglycohydrolase family protein | - |
| MCS25_RS03955 (MCS25_03960) | - | 931524..932219 (-) | 696 | WP_005874182.1 | hypothetical protein | - |
| MCS25_RS03960 (MCS25_03965) | - | 932216..933139 (-) | 924 | WP_005874212.1 | relaxase/mobilization nuclease domain-containing protein | - |
| MCS25_RS03965 (MCS25_03970) | - | 933136..933483 (-) | 348 | WP_039418494.1 | MobC family plasmid mobilization relaxosome protein | - |
| MCS25_RS03970 (MCS25_03975) | - | 933590..934648 (-) | 1059 | WP_005874198.1 | DUF6371 domain-containing protein | - |
| MCS25_RS03975 (MCS25_03980) | - | 934746..936122 (-) | 1377 | WP_005874156.1 | DUF3987 domain-containing protein | - |
| MCS25_RS03980 (MCS25_03985) | - | 936132..936491 (-) | 360 | WP_005874216.1 | helix-turn-helix domain-containing protein | - |
| MCS25_RS03985 (MCS25_03990) | - | 936753..937358 (+) | 606 | WP_043876420.1 | hypothetical protein | - |
| MCS25_RS03990 (MCS25_03995) | - | 937396..938094 (-) | 699 | WP_005874206.1 | hypothetical protein | - |
| MCS25_RS03995 (MCS25_04000) | - | 938196..939299 (-) | 1104 | WP_005874222.1 | site-specific integrase | - |
| MCS25_RS04000 (MCS25_04005) | - | 939388..940341 (-) | 954 | WP_316896303.1 | helix-turn-helix domain-containing protein | - |
| MCS25_RS04005 (MCS25_04010) | mnmE | 940536..941960 (-) | 1425 | WP_005874231.1 | tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE | - |
| MCS25_RS04010 (MCS25_04015) | - | 942124..943035 (-) | 912 | WP_005874194.1 | hypothetical protein | - |
| MCS25_RS04015 (MCS25_04020) | - | 943383..943626 (-) | 244 | Protein_797 | conjugative transposon protein TraJ | - |
| MCS25_RS04020 (MCS25_04025) | bcp | 943923..944378 (+) | 456 | WP_005874193.1 | thioredoxin-dependent thiol peroxidase | - |
| MCS25_RS04025 (MCS25_04030) | recA | 944399..945421 (+) | 1023 | WP_004584116.1 | recombinase RecA | Machinery gene |
Sequence
Protein
Download Length: 340 a.a. Molecular weight: 36888.28 Da Isoelectric Point: 5.5493
>NTDB_id=655390 MCS25_RS04025 WP_004584116.1 944399..945421(+) (recA) [Porphyromonas gingivalis strain W50]
MAEEKIPTVQDEKKLQALRMATEKIEKTFGKGAIMNMGANTVEDVSVIPSGSIGLDLALGVGGYPRGRIIEIYGPESSGK
TTLAIHAIAEAQKAGGLAAIIDAEHAFDRTYAEKLGVNVDNLWIAQPDNGEQALEIAEQLIRSSAVDIIVIDSVAALTPK
AEIEGEMGDNKVGLHARLMSQALRKMTGAISKSNTTCIFINQLREKIGVLFGNPETTTGGNALKFYASIRIDIRKSTPIK
DGEEIMGHLTKVKVLKNKVAPPFRKAEFDIVFGEGISRSGEIIDLGVELDIIKKSGSWFSYGDTKLGQGREAAKEMIRDN
EELAEELTEKIREAIRNKHS
MAEEKIPTVQDEKKLQALRMATEKIEKTFGKGAIMNMGANTVEDVSVIPSGSIGLDLALGVGGYPRGRIIEIYGPESSGK
TTLAIHAIAEAQKAGGLAAIIDAEHAFDRTYAEKLGVNVDNLWIAQPDNGEQALEIAEQLIRSSAVDIIVIDSVAALTPK
AEIEGEMGDNKVGLHARLMSQALRKMTGAISKSNTTCIFINQLREKIGVLFGNPETTTGGNALKFYASIRIDIRKSTPIK
DGEEIMGHLTKVKVLKNKVAPPFRKAEFDIVFGEGISRSGEIIDLGVELDIIKKSGSWFSYGDTKLGQGREAAKEMIRDN
EELAEELTEKIREAIRNKHS
Nucleotide
Download Length: 1023 bp
>NTDB_id=655390 MCS25_RS04025 WP_004584116.1 944399..945421(+) (recA) [Porphyromonas gingivalis strain W50]
ATGGCAGAAGAAAAGATACCCACGGTGCAGGATGAGAAGAAACTGCAAGCCCTGCGAATGGCCACGGAGAAGATAGAGAA
GACTTTCGGAAAAGGTGCTATCATGAATATGGGAGCCAATACGGTGGAAGATGTAAGCGTTATCCCCTCCGGCTCCATCG
GTTTGGATTTGGCTCTCGGTGTAGGCGGTTACCCTCGCGGACGTATTATCGAGATATACGGACCGGAATCTTCCGGTAAG
ACCACTCTGGCTATCCATGCCATTGCCGAAGCGCAGAAAGCAGGTGGCTTGGCGGCCATCATCGATGCGGAACATGCTTT
CGACCGCACCTATGCCGAAAAGTTGGGCGTCAATGTGGATAATCTCTGGATAGCACAGCCGGACAACGGTGAACAGGCTT
TGGAAATCGCCGAGCAACTGATTCGCTCTTCTGCTGTCGACATTATAGTCATTGACTCTGTCGCAGCCCTCACGCCCAAA
GCGGAAATAGAGGGTGAAATGGGGGACAACAAGGTTGGTTTGCATGCCCGTCTGATGTCGCAAGCACTGCGTAAGATGAC
CGGAGCCATCAGCAAATCCAATACAACCTGTATCTTCATCAACCAGCTACGAGAGAAGATCGGTGTTTTGTTCGGCAATC
CGGAGACCACCACAGGGGGGAATGCACTGAAATTCTATGCATCCATCCGCATCGACATTCGCAAGAGCACACCGATCAAG
GATGGCGAAGAGATCATGGGACACCTGACCAAGGTGAAAGTGTTGAAAAACAAGGTGGCTCCTCCATTCCGCAAAGCAGA
GTTCGACATCGTATTCGGAGAAGGTATTTCGCGTTCCGGCGAGATTATCGATTTGGGTGTAGAGCTGGATATTATCAAGA
AGAGCGGATCGTGGTTCAGCTATGGCGATACGAAGCTGGGACAGGGACGTGAGGCTGCCAAGGAAATGATTCGGGACAAT
GAGGAATTGGCCGAAGAACTGACTGAAAAAATACGCGAAGCCATTCGCAACAAACATTCATAA
ATGGCAGAAGAAAAGATACCCACGGTGCAGGATGAGAAGAAACTGCAAGCCCTGCGAATGGCCACGGAGAAGATAGAGAA
GACTTTCGGAAAAGGTGCTATCATGAATATGGGAGCCAATACGGTGGAAGATGTAAGCGTTATCCCCTCCGGCTCCATCG
GTTTGGATTTGGCTCTCGGTGTAGGCGGTTACCCTCGCGGACGTATTATCGAGATATACGGACCGGAATCTTCCGGTAAG
ACCACTCTGGCTATCCATGCCATTGCCGAAGCGCAGAAAGCAGGTGGCTTGGCGGCCATCATCGATGCGGAACATGCTTT
CGACCGCACCTATGCCGAAAAGTTGGGCGTCAATGTGGATAATCTCTGGATAGCACAGCCGGACAACGGTGAACAGGCTT
TGGAAATCGCCGAGCAACTGATTCGCTCTTCTGCTGTCGACATTATAGTCATTGACTCTGTCGCAGCCCTCACGCCCAAA
GCGGAAATAGAGGGTGAAATGGGGGACAACAAGGTTGGTTTGCATGCCCGTCTGATGTCGCAAGCACTGCGTAAGATGAC
CGGAGCCATCAGCAAATCCAATACAACCTGTATCTTCATCAACCAGCTACGAGAGAAGATCGGTGTTTTGTTCGGCAATC
CGGAGACCACCACAGGGGGGAATGCACTGAAATTCTATGCATCCATCCGCATCGACATTCGCAAGAGCACACCGATCAAG
GATGGCGAAGAGATCATGGGACACCTGACCAAGGTGAAAGTGTTGAAAAACAAGGTGGCTCCTCCATTCCGCAAAGCAGA
GTTCGACATCGTATTCGGAGAAGGTATTTCGCGTTCCGGCGAGATTATCGATTTGGGTGTAGAGCTGGATATTATCAAGA
AGAGCGGATCGTGGTTCAGCTATGGCGATACGAAGCTGGGACAGGGACGTGAGGCTGCCAAGGAAATGATTCGGGACAAT
GAGGAATTGGCCGAAGAACTGACTGAAAAAATACGCGAAGCCATTCGCAACAAACATTCATAA
Similar proteins
Only experimentally validated proteins are listed.