Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   L6494_RS02800 Genome accession   NZ_CP091913
Coordinates   644048..645127 (+) Length   359 a.a.
NCBI ID   WP_237991348.1    Uniprot ID   -
Organism   Nostoc sp. UHCC 0870     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 639048..650127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6494_RS02785 (L6494_02785) - 639360..641741 (+) 2382 WP_237991345.1 dynamin family protein -
  L6494_RS02790 (L6494_02790) - 641789..642811 (+) 1023 WP_237991346.1 YjcZ-like family protein -
  L6494_RS02795 (L6494_02795) - 642808..643815 (+) 1008 WP_237991347.1 patatin-like phospholipase family protein -
  L6494_RS02800 (L6494_02800) recA 644048..645127 (+) 1080 WP_237991348.1 recombinase RecA Machinery gene
  L6494_RS02805 (L6494_02805) - 645289..646029 (-) 741 WP_237991349.1 FHA domain-containing protein -
  L6494_RS02810 (L6494_02810) - 646365..647984 (-) 1620 WP_237991350.1 serine/threonine-protein kinase -
  L6494_RS02815 (L6494_02815) - 648451..648612 (+) 162 WP_237991351.1 metallothionein -
  L6494_RS02820 (L6494_02820) hemL 648752..650050 (-) 1299 WP_237991352.1 glutamate-1-semialdehyde 2,1-aminomutase -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38525.88 Da        Isoelectric Point: 4.9821

>NTDB_id=654640 L6494_RS02800 WP_237991348.1 644048..645127(+) (recA) [Nostoc sp. UHCC 0870]
MAINTDTSGKQKALTMVLNQIERSFGKGAIMRLGDATRMRVETISTGALTLDLALGGGLPKGRVIEIYGPESSGKTTVAL
HAIAEVQKEGGIAAFVDAEHALDPTYAAALGVDIHNLLVSQPDTGEAGLEIVDQLVRSAAVDIVVIDSVAALVPRAEIEG
DMGDAHVGLQARLMSQALRKITGNIGKSGCTVIFINQLRQKIGVTYGSPETTTGGNALKFYASVRLDIRRIQTLKKGTDE
FGNRVKVKVAKNKVAPPFRIAEFDIIFGKGISTIGCLVDLAEETGILVRKGAWYSYNGDNISQGRDNAIKYLEEKPDFSE
QIKKLVREKLDKGAVVSANSVAKVNEEDEEDEDIDAEEE

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=654640 L6494_RS02800 WP_237991348.1 644048..645127(+) (recA) [Nostoc sp. UHCC 0870]
ATGGCTATCAATACCGATACTTCCGGCAAGCAAAAAGCTCTAACGATGGTACTTAACCAGATTGAGCGCAGCTTCGGTAA
AGGAGCAATCATGCGCCTGGGGGATGCTACCCGGATGCGGGTAGAGACAATTTCCACAGGGGCGTTGACTTTGGATTTAG
CATTGGGTGGTGGTTTACCCAAGGGACGGGTAATTGAGATTTATGGGCCGGAAAGTTCCGGTAAGACGACTGTAGCACTG
CACGCGATCGCAGAAGTACAAAAAGAAGGTGGCATTGCTGCTTTTGTAGACGCAGAACACGCCCTTGACCCTACCTATGC
TGCGGCTTTAGGTGTAGATATTCACAATCTCCTGGTTTCTCAACCTGACACCGGTGAAGCAGGCTTGGAAATAGTTGACC
AATTAGTACGTTCCGCCGCCGTTGACATTGTAGTTATTGACTCAGTAGCAGCCTTAGTTCCCCGCGCCGAAATTGAAGGG
GATATGGGTGATGCTCACGTTGGTTTGCAAGCCAGACTGATGAGTCAAGCTCTACGTAAAATCACTGGCAATATTGGTAA
ATCTGGTTGTACCGTCATCTTTATTAACCAGTTACGCCAAAAAATTGGTGTCACCTACGGTAGCCCTGAAACTACTACCG
GTGGTAACGCGTTGAAGTTTTACGCGTCAGTGCGCTTGGATATTCGCCGGATTCAAACCTTGAAAAAGGGTACAGATGAA
TTTGGCAACCGCGTTAAAGTCAAAGTTGCTAAAAATAAAGTTGCACCACCTTTTAGAATAGCGGAATTCGACATTATTTT
TGGGAAAGGAATTTCTACTATAGGTTGTCTAGTGGATTTAGCCGAAGAAACTGGTATTCTTGTTCGGAAAGGAGCTTGGT
ACAGTTACAATGGCGATAACATTTCCCAAGGTCGAGATAACGCTATTAAGTACCTAGAGGAAAAGCCAGATTTTTCTGAA
CAAATTAAGAAACTAGTGCGAGAAAAATTAGACAAGGGCGCAGTTGTTTCGGCAAATTCTGTGGCTAAAGTCAATGAAGA
AGATGAAGAAGATGAAGATATTGATGCAGAGGAAGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

63.584

96.379

0.613
  recA Pseudomonas stutzeri DSM 10701

63.295

96.379

0.61
  recA Acinetobacter baumannii D1279779

63.295

96.379

0.61
  recA Bacillus subtilis subsp. subtilis str. 168

62.952

92.479

0.582
  recA Ralstonia pseudosolanacearum GMI1000

62.952

92.479

0.582
  recA Latilactobacillus sakei subsp. sakei 23K

59.429

97.493

0.579
  recA Streptococcus mutans UA159

58.357

98.329

0.574
  recA Glaesserella parasuis strain SC1401

58.571

97.493

0.571
  recA Neisseria gonorrhoeae MS11

64.062

89.136

0.571
  recA Neisseria gonorrhoeae strain FA1090

64.062

89.136

0.571
  recA Neisseria gonorrhoeae MS11

64.062

89.136

0.571
  recA Helicobacter pylori 26695

61.446

92.479

0.568
  recA Helicobacter pylori strain NCTC11637

61.446

92.479

0.568
  recA Streptococcus pyogenes NZ131

57.55

97.772

0.563
  recA Streptococcus mitis NCTC 12261

57.55

97.772

0.563
  recA Streptococcus pneumoniae Rx1

58.046

96.936

0.563
  recA Streptococcus pneumoniae D39

58.046

96.936

0.563
  recA Streptococcus pneumoniae R6

58.046

96.936

0.563
  recA Streptococcus pneumoniae TIGR4

58.046

96.936

0.563
  recA Streptococcus mitis SK321

57.265

97.772

0.56
  recA Vibrio cholerae strain A1552

62.112

89.694

0.557
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.112

89.694

0.557
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.971

96.1

0.557
  recA Lactococcus lactis subsp. cremoris KW2

60.062

89.972

0.54
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.146

91.365

0.54
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.798

92.201

0.524