Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG429_RS10220 Genome accession   NZ_CP108131
Coordinates   2083878..2084528 (-) Length   216 a.a.
NCBI ID   WP_328924983.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00190     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2078878..2089528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG429_RS10190 (OG429_10220) - 2079257..2080027 (-) 771 WP_328924978.1 sulfite exporter TauE/SafE family protein -
  OG429_RS10195 (OG429_10225) - 2080117..2081103 (-) 987 WP_328924979.1 SPFH domain-containing protein -
  OG429_RS10200 (OG429_10230) - 2081188..2081619 (-) 432 WP_328924980.1 NfeD family protein -
  OG429_RS10205 (OG429_10235) - 2081671..2082468 (-) 798 WP_328924981.1 ABC transporter ATP-binding protein -
  OG429_RS10210 (OG429_10240) - 2082602..2083387 (+) 786 WP_328924982.1 hypothetical protein -
  OG429_RS10215 (OG429_10245) - 2083484..2083729 (-) 246 WP_328930220.1 chaplin -
  OG429_RS10220 (OG429_10250) vraR 2083878..2084528 (-) 651 WP_328924983.1 response regulator transcription factor Regulator
  OG429_RS10225 (OG429_10255) - 2084521..2085666 (-) 1146 WP_328930221.1 GAF domain-containing sensor histidine kinase -
  OG429_RS10230 (OG429_10260) - 2085840..2086565 (+) 726 WP_328924984.1 SDR family NAD(P)-dependent oxidoreductase -
  OG429_RS10235 (OG429_10265) - 2086664..2087734 (+) 1071 WP_328930222.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  OG429_RS10240 (OG429_10270) - 2088044..2088751 (+) 708 WP_328924985.1 transglycosylase SLT domain-containing protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23562.86 Da        Isoelectric Point: 5.1748

>NTDB_id=654640 OG429_RS10220 WP_328924983.1 2083878..2084528(-) (vraR) [Streptomyces sp. NBC_00190]
MADTPSRIRVVLVDDHQVVRRGLRTFLEVQDDIEVVGEASDGEEGVARAEELRPDVILMDVKMPGTDGIEALRRLRELAN
PARVLIVTSFTEQRTVIPALRAGAAGYVYKDIDPDALAGAIRSVHAGHVLLQPEVAVTLLSQEEQSPSAGRPGSLTDRER
EVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHGLAE

Nucleotide


Download         Length: 651 bp        

>NTDB_id=654640 OG429_RS10220 WP_328924983.1 2083878..2084528(-) (vraR) [Streptomyces sp. NBC_00190]
GTGGCTGACACCCCCAGCCGGATCCGAGTGGTGCTGGTCGACGACCACCAGGTGGTCCGCCGGGGCCTGCGCACCTTCCT
GGAGGTCCAGGACGACATCGAGGTGGTCGGAGAGGCCTCCGACGGCGAGGAGGGCGTCGCCCGCGCCGAGGAGCTGCGGC
CCGACGTGATCCTCATGGACGTCAAGATGCCGGGCACCGACGGCATCGAGGCGCTGCGCAGGCTCCGCGAGCTGGCGAAC
CCGGCCCGGGTGCTGATCGTCACCAGCTTCACGGAGCAGCGGACCGTGATCCCCGCCCTGCGGGCCGGCGCCGCGGGATA
CGTCTACAAGGACATCGATCCCGACGCCCTGGCCGGAGCCATCCGCTCCGTCCACGCCGGCCACGTCCTCCTCCAGCCCG
AGGTGGCGGTGACCCTGCTCTCCCAGGAGGAGCAGAGCCCTTCGGCCGGCCGGCCGGGCTCACTGACCGATCGGGAGCGC
GAGGTGCTGGGCCTCATCGCGGACGGCCGCTCCAACCGCGAGATCGCCCGCGCGCTCGTCCTCTCCGAGAAGACGGTCAA
GACCCACGTCTCGAACATCCTGATGAAGCTGGACCTGTCCGACCGGACGCAGGCCGCGTTGTGGGCGGTCAGGCACGGGC
TCGCCGAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-209)

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.976

96.759

0.435
  degU Bacillus subtilis subsp. subtilis str. 168

39.823

100

0.417