Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   L6466_RS10015 Genome accession   NZ_CP091794
Coordinates   2453998..2455020 (+) Length   340 a.a.
NCBI ID   WP_091816160.1    Uniprot ID   -
Organism   Prevotella communis strain E15-14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2448998..2460020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6466_RS09990 (L6466_09990) - 2449041..2450117 (+) 1077 WP_237803013.1 OmpA family protein -
  L6466_RS09995 (L6466_09995) rhaD 2450230..2451039 (-) 810 WP_091816149.1 rhamnulose-1-phosphate aldolase -
  L6466_RS10000 (L6466_10000) - 2451219..2451812 (+) 594 WP_237803011.1 DUF6621 family protein -
  L6466_RS10005 (L6466_10005) - 2451840..2452700 (+) 861 WP_091816155.1 mechanosensitive ion channel domain-containing protein -
  L6466_RS10010 (L6466_10010) - 2452708..2453946 (+) 1239 WP_091816158.1 saccharopine dehydrogenase family protein -
  L6466_RS10015 (L6466_10015) recA 2453998..2455020 (+) 1023 WP_091816160.1 recombinase RecA Machinery gene
  L6466_RS10020 (L6466_10020) - 2455073..2456392 (-) 1320 WP_237803010.1 hypothetical protein -
  L6466_RS10025 (L6466_10025) dnaK 2456560..2458470 (+) 1911 WP_237795593.1 molecular chaperone DnaK -
  L6466_RS10030 (L6466_10030) - 2458576..2459202 (+) 627 WP_237803009.1 ATP-binding protein -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 36968.48 Da        Isoelectric Point: 5.5566

>NTDB_id=653684 L6466_RS10015 WP_091816160.1 2453998..2455020(+) (recA) [Prevotella communis strain E15-14]
MAKKEETEQLTPQQEKMKALQAAMAKIEKDFGKGSIMRMGEESVENVEVIPTGSIALNAALGVGGYPKGRIIEIYGPESS
GKTTLAIHAIAECQKNGGIAAFIDAEHAFDRFYAQKLGVDIDNLYISQPDNGEQALEIADQLIRSAAIDIIVIDSVAALT
PKKEIEGDMGDSAVGLHARLMSQALRKVTSTIAKTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRKVTS
IKDGDNIIGNQVRVKVVKNKVAPPFRKAEFEITFGEGISKIGEIVDLGVELGIIKKSGSWFSYGESKLAQGRDAVKNLLK
DNPELCEELEAKIMEKLHEQ

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=653684 L6466_RS10015 WP_091816160.1 2453998..2455020(+) (recA) [Prevotella communis strain E15-14]
ATGGCAAAGAAAGAAGAAACAGAACAGTTGACTCCTCAACAGGAGAAAATGAAGGCCTTGCAGGCTGCCATGGCGAAGAT
CGAGAAAGACTTCGGTAAGGGTAGTATCATGCGCATGGGCGAGGAAAGCGTGGAAAACGTGGAGGTCATCCCCACCGGTT
CTATCGCACTGAATGCTGCCCTTGGCGTAGGTGGCTATCCCAAGGGACGTATCATCGAAATCTATGGTCCTGAGTCATCA
GGTAAGACCACTCTGGCTATCCATGCCATCGCAGAATGCCAGAAGAATGGCGGTATTGCAGCCTTTATCGACGCAGAGCA
TGCCTTCGACCGTTTCTATGCACAGAAGCTGGGTGTCGATATTGATAACCTGTATATCTCACAGCCCGACAATGGTGAAC
AGGCTCTTGAGATTGCCGACCAGCTGATTCGCTCGGCTGCTATCGACATCATTGTGATTGACTCTGTAGCCGCCCTGACG
CCTAAGAAGGAGATTGAGGGCGATATGGGTGATTCAGCAGTAGGTCTGCACGCACGTCTGATGAGCCAGGCCCTGCGCAA
AGTCACCTCTACCATCGCCAAGACCAACACCACCTGTATCTTCATCAACCAGTTGCGTGAGAAGATTGGTGTCATGTTTG
GCAATCCTGAGACAACCACTGGTGGTAACGCCCTGAAGTTCTACGCTTCCGTACGTCTGGATATCCGTAAGGTGACCTCT
ATCAAGGATGGCGACAACATCATTGGTAACCAGGTCCGCGTGAAGGTGGTAAAGAACAAGGTGGCTCCTCCTTTCCGCAA
GGCAGAGTTTGAGATCACCTTCGGCGAGGGTATCTCAAAGATTGGCGAGATTGTAGACCTGGGTGTAGAACTGGGTATCA
TCAAGAAGAGTGGCTCATGGTTCTCTTACGGGGAATCAAAACTGGCTCAGGGACGTGATGCCGTGAAGAATCTGCTGAAG
GACAACCCCGAGCTTTGTGAGGAACTGGAGGCAAAGATTATGGAGAAACTACACGAGCAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

68.895

100

0.697
  recA Neisseria gonorrhoeae strain FA1090

67.188

94.118

0.632
  recA Neisseria gonorrhoeae MS11

67.188

94.118

0.632
  recA Neisseria gonorrhoeae MS11

67.188

94.118

0.632
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.396

95

0.612
  recA Acinetobacter baylyi ADP1

64.286

94.706

0.609
  recA Lactococcus lactis subsp. cremoris KW2

60.704

100

0.609
  recA Streptococcus pyogenes NZ131

60.174

100

0.609
  recA Helicobacter pylori 26695

63.385

95.588

0.606
  recA Streptococcus pneumoniae R6

59.884

100

0.606
  recA Streptococcus pneumoniae D39

59.884

100

0.606
  recA Streptococcus pneumoniae TIGR4

59.884

100

0.606
  recA Streptococcus pneumoniae Rx1

59.884

100

0.606
  recA Glaesserella parasuis strain SC1401

62.424

97.059

0.606
  recA Acinetobacter baumannii D1279779

63.272

95.294

0.603
  recA Helicobacter pylori strain NCTC11637

63.077

95.588

0.603
  recA Ralstonia pseudosolanacearum GMI1000

65.595

91.471

0.6
  recA Bacillus subtilis subsp. subtilis str. 168

63.551

94.412

0.6
  recA Streptococcus mutans UA159

59.706

100

0.597
  recA Streptococcus mitis SK321

62.229

95

0.591
  recA Streptococcus mitis NCTC 12261

62.229

95

0.591
  recA Latilactobacillus sakei subsp. sakei 23K

62.305

94.412

0.588
  recA Pseudomonas stutzeri DSM 10701

61.111

95.294

0.582
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.877

95.294

0.571
  recA Vibrio cholerae strain A1552

59.877

95.294

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.143

96.765

0.553