Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   L6465_RS03840 Genome accession   NZ_CP091788
Coordinates   1018475..1019500 (-) Length   341 a.a.
NCBI ID   WP_237826373.1    Uniprot ID   -
Organism   Prevotella sp. E2-28     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1013475..1024500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6465_RS03825 (L6465_03825) - 1014219..1014773 (-) 555 WP_237826368.1 AlpA family transcriptional regulator -
  L6465_RS03830 (L6465_03830) dnaK 1014988..1016898 (-) 1911 WP_237826370.1 molecular chaperone DnaK -
  L6465_RS03835 (L6465_03835) - 1017066..1018385 (+) 1320 WP_237826371.1 hypothetical protein -
  L6465_RS03840 (L6465_03840) recA 1018475..1019500 (-) 1026 WP_237826373.1 recombinase RecA Machinery gene
  L6465_RS03845 (L6465_03845) - 1019561..1020799 (-) 1239 WP_237826374.1 saccharopine dehydrogenase family protein -
  L6465_RS03850 (L6465_03850) - 1020809..1021669 (-) 861 WP_237826377.1 mechanosensitive ion channel family protein -
  L6465_RS03855 (L6465_03855) - 1021689..1022276 (-) 588 WP_237826380.1 DUF6621 family protein -
  L6465_RS03860 (L6465_03860) rhaD 1022456..1023265 (+) 810 WP_237826382.1 rhamnulose-1-phosphate aldolase -
  L6465_RS03865 (L6465_03865) - 1023402..1024481 (-) 1080 WP_237826383.1 OmpA family protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37006.49 Da        Isoelectric Point: 5.5778

>NTDB_id=653657 L6465_RS03840 WP_237826373.1 1018475..1019500(-) (recA) [Prevotella sp. E2-28]
MAKKEETEQLTPQQEKMKALQAALSKIEKDFGKGSIMRMGEEKIENVEVIPTGSISLNAALGVGGYPKGRIIEIYGPESS
GKTTLAIHAIAEAQKAGGVAAFIDAEHAFDRFYAQKLGVDIDNLYISQPDNGEQALEIADQLIRSAAIDIIVIDSVAALT
PKKEIEGDMGDSAVGLHARLMSQALRKVTSTIAKTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRKSAP
VKDGDNIIGNQVKVKVVKNKVAPPFRKAEFEITFGEGISKVGEIVDLGVEYGLIKKSGSWFSYEDSKLGQGRDAVKTLLT
DNPELCEELETKIMDILKTQK

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=653657 L6465_RS03840 WP_237826373.1 1018475..1019500(-) (recA) [Prevotella sp. E2-28]
ATGGCTAAAAAAGAAGAAACAGAACAGCTGACTCCGCAACAGGAGAAGATGAAAGCCCTGCAAGCTGCCCTGTCGAAGAT
TGAGAAGGACTTCGGCAAGGGAAGCATCATGCGCATGGGCGAAGAAAAAATAGAGAACGTAGAAGTCATCCCTACTGGTT
CAATAAGCCTGAACGCCGCACTCGGAGTTGGCGGTTATCCTAAGGGACGTATCATCGAAATCTATGGTCCTGAGTCATCT
GGTAAGACCACGCTGGCTATCCACGCCATCGCTGAAGCCCAGAAGGCTGGCGGTGTGGCAGCATTCATTGATGCTGAGCA
CGCTTTCGACCGTTTCTATGCCCAGAAGCTGGGTGTTGATATTGACAATCTGTATATCTCGCAGCCCGACAATGGTGAAC
AGGCACTCGAGATTGCCGACCAGCTCATTCGTTCTGCTGCCATCGACATCATCGTTATCGACTCTGTGGCTGCCCTGACT
CCTAAGAAGGAGATTGAAGGTGACATGGGCGACTCTGCCGTAGGTCTGCACGCTCGTTTGATGAGTCAGGCCCTGCGTAA
GGTAACCTCTACCATCGCCAAGACCAATACTACCTGTATCTTCATCAACCAGCTACGTGAAAAGATTGGCGTGATGTTTG
GTAATCCTGAGACTACCACTGGTGGTAATGCTCTGAAGTTTTACGCCTCAGTACGCTTGGACATCCGCAAGTCTGCCCCC
GTCAAAGACGGCGACAACATCATTGGTAATCAGGTGAAGGTGAAGGTAGTCAAGAACAAGGTGGCTCCTCCCTTCCGCAA
GGCTGAGTTTGAAATCACCTTCGGCGAAGGTATCTCAAAGGTTGGCGAGATTGTTGACCTGGGTGTTGAGTACGGTCTCA
TCAAGAAGAGTGGCTCATGGTTCTCTTACGAAGACTCTAAACTGGGACAGGGGCGCGATGCTGTGAAGACATTGCTGACT
GATAATCCTGAACTCTGCGAGGAACTCGAGACCAAGATTATGGATATCCTCAAGACGCAGAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.919

100

0.689
  recA Acinetobacter baylyi ADP1

64.308

95.308

0.613
  recA Glaesserella parasuis strain SC1401

62.952

97.361

0.613
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.109

94.135

0.613
  recA Neisseria gonorrhoeae MS11

65.312

93.842

0.613
  recA Neisseria gonorrhoeae MS11

65.312

93.842

0.613
  recA Neisseria gonorrhoeae strain FA1090

65.312

93.842

0.613
  recA Acinetobacter baumannii D1279779

63.497

95.601

0.607
  recA Streptococcus pyogenes NZ131

60

99.707

0.598
  recA Streptococcus pneumoniae Rx1

60

99.707

0.598
  recA Streptococcus pneumoniae D39

60

99.707

0.598
  recA Streptococcus pneumoniae R6

60

99.707

0.598
  recA Streptococcus pneumoniae TIGR4

60

99.707

0.598
  recA Helicobacter pylori strain NCTC11637

63.24

94.135

0.595
  recA Helicobacter pylori 26695

63.24

94.135

0.595
  recA Ralstonia pseudosolanacearum GMI1000

64.952

91.202

0.592
  recA Bacillus subtilis subsp. subtilis str. 168

63.323

93.548

0.592
  recA Streptococcus mutans UA159

59.118

99.707

0.589
  recA Streptococcus mitis SK321

62.229

94.721

0.589
  recA Streptococcus mitis NCTC 12261

62.229

94.721

0.589
  recA Pseudomonas stutzeri DSM 10701

62.5

93.842

0.587
  recA Lactococcus lactis subsp. cremoris KW2

61.61

94.721

0.584
  recA Latilactobacillus sakei subsp. sakei 23K

61.059

94.135

0.575
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.877

95.015

0.569
  recA Vibrio cholerae strain A1552

59.877

95.015

0.569
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.359

96.481

0.563