Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LBPC_RS13425 Genome accession   NZ_AP012541
Coordinates   2736076..2737269 (-) Length   397 a.a.
NCBI ID   WP_016365408.1    Uniprot ID   A0A8E0I6Q7
Organism   Lacticaseibacillus paracasei subsp. paracasei strain JCM 8130     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2731076..2742269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LBPC_RS13400 (LBPC_2589) - 2731289..2731975 (-) 687 WP_003662616.1 histidine phosphatase family protein -
  LBPC_RS13405 (LBPC_2590) - 2732020..2732832 (-) 813 WP_003662615.1 Cof-type HAD-IIB family hydrolase -
  LBPC_RS13410 (LBPC_2591) - 2732929..2733411 (+) 483 WP_003567838.1 ribonuclease H family protein -
  LBPC_RS13415 (LBPC_2592) - 2733417..2734319 (-) 903 WP_003567840.1 LysR family transcriptional regulator -
  LBPC_RS13420 (LBPC_2593) - 2734569..2735771 (+) 1203 WP_016383391.1 PLP-dependent aminotransferase family protein -
  LBPC_RS13425 (LBPC_2594) recA 2736076..2737269 (-) 1194 WP_016365408.1 recombinase RecA Machinery gene
  LBPC_RS13430 (LBPC_2595) - 2737669..2738367 (+) 699 WP_003662610.1 DUF554 domain-containing protein -
  LBPC_RS13435 (LBPC_2596) - 2738524..2738997 (-) 474 WP_003567848.1 DUF7679 family protein -
  LBPC_RS17315 - 2739317..2739655 (-) 339 WP_080543873.1 hypothetical protein -
  LBPC_RS13440 (LBPC_2597) - 2739704..2741686 (-) 1983 WP_003662605.1 fructose-specific PTS transporter subunit EIIC -

Sequence

Protein


Download         Length: 397 a.a.        Molecular weight: 42852.61 Da        Isoelectric Point: 5.4188

>NTDB_id=65317 LBPC_RS13425 WP_016365408.1 2736076..2737269(-) (recA) [Lacticaseibacillus paracasei subsp. paracasei strain JCM 8130]
MAKKTTAKNDNAKSDATDRDTELEKALQKIKKAFGEGAVMKMGDRPELKVDVVSTGILSLDLALGVGGLPRGRIVEVYGP
ESTGKTTIALQTIAELQKSGGKAAYIDAENAMDPKYAAELGVNIDDLLLSQPNSGEQGLEIAEMLIESAAVDIVVIDSVA
ALVPKAEIEGAIGDSHVGLQARLMSQALRKMAGSINNTNTLVIFINQLREKVGVMFGNPEVTPGGRALKFYASVRIEVKR
GQQVKDGKDVVGFASKLKVTKNKVAPPFKSVETTMSFGHGIEHNTDMINLATDKDNDIDVITKSGSWYNYGKERLGQGLV
NASHYLDEHPEISKEIEEKIREQVAPKKPEEADEKQDDKKDGQASADKKTEKTTTTDTEKKAGKKDDPASFGVDRLV

Nucleotide


Download         Length: 1194 bp        

>NTDB_id=65317 LBPC_RS13425 WP_016365408.1 2736076..2737269(-) (recA) [Lacticaseibacillus paracasei subsp. paracasei strain JCM 8130]
ATGGCTAAGAAAACGACAGCAAAGAATGATAATGCTAAATCCGATGCTACAGATCGCGATACCGAACTAGAAAAAGCCCT
TCAGAAGATCAAGAAAGCCTTTGGTGAAGGTGCCGTCATGAAGATGGGCGATCGACCGGAACTGAAGGTTGATGTCGTCT
CAACAGGCATTTTATCCTTGGATCTTGCACTCGGTGTCGGCGGGTTACCGCGTGGCCGAATCGTTGAAGTCTATGGTCCT
GAAAGTACCGGAAAAACAACGATTGCGTTGCAGACTATTGCCGAATTGCAGAAATCAGGCGGCAAGGCGGCTTACATTGA
CGCCGAAAATGCGATGGACCCGAAGTATGCGGCGGAACTTGGCGTAAATATTGACGACTTACTGTTGTCTCAGCCAAACT
CTGGGGAACAGGGGCTTGAAATTGCTGAAATGCTGATTGAATCAGCGGCTGTTGATATTGTTGTCATTGACTCTGTCGCA
GCCTTGGTTCCCAAGGCTGAAATTGAAGGTGCCATCGGGGATAGCCATGTGGGCTTGCAAGCCCGGCTGATGTCGCAGGC
ACTGCGGAAGATGGCCGGTTCGATCAACAATACCAATACGCTGGTTATTTTCATTAACCAATTGCGTGAAAAAGTTGGCG
TGATGTTTGGCAACCCAGAAGTGACACCGGGCGGCCGTGCCTTGAAATTCTATGCGTCTGTGCGGATTGAAGTCAAGCGT
GGGCAGCAGGTGAAAGACGGCAAAGATGTTGTCGGCTTCGCTAGCAAACTGAAAGTCACTAAGAATAAGGTCGCACCGCC
GTTTAAATCGGTTGAAACCACGATGTCATTTGGTCACGGGATTGAACACAATACCGATATGATTAACTTGGCAACCGATA
AAGACAATGACATTGATGTCATCACCAAGTCTGGCTCTTGGTATAACTATGGCAAGGAACGTTTGGGCCAAGGACTTGTC
AACGCATCTCACTACTTGGATGAACATCCGGAAATTTCTAAGGAAATCGAAGAAAAGATTCGTGAACAAGTTGCGCCAAA
GAAGCCTGAAGAAGCCGATGAGAAGCAGGATGATAAGAAAGACGGTCAGGCATCTGCTGATAAAAAGACCGAAAAGACAA
CGACCACTGATACTGAAAAGAAAGCCGGCAAGAAAGATGACCCTGCCAGCTTCGGGGTTGATCGGTTAGTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis SK321

57.143

95.214

0.544
  recA Streptococcus mitis NCTC 12261

57.143

95.214

0.544
  recA Streptococcus pneumoniae TIGR4

57.923

92.191

0.534
  recA Streptococcus pneumoniae D39

57.923

92.191

0.534
  recA Streptococcus pneumoniae R6

57.923

92.191

0.534
  recA Streptococcus pneumoniae Rx1

57.923

92.191

0.534
  recA Streptococcus mutans UA159

56.3

93.955

0.529
  recA Streptococcus pyogenes NZ131

59.42

86.902

0.516
  recA Latilactobacillus sakei subsp. sakei 23K

62.963

81.612

0.514
  recA Bacillus subtilis subsp. subtilis str. 168

61.774

82.368

0.509
  recA Lactococcus lactis subsp. cremoris KW2

58.601

86.398

0.506
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.891

85.894

0.489
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

53.672

89.169

0.479
  recA Pseudomonas stutzeri DSM 10701

58.075

81.108

0.471
  recA Ralstonia pseudosolanacearum GMI1000

58.413

79.345

0.463
  recA Glaesserella parasuis strain SC1401

56.656

81.36

0.461
  recA Acinetobacter baylyi ADP1

54.79

84.131

0.461
  recA Acinetobacter baumannii D1279779

55.657

82.368

0.458
  recA Neisseria gonorrhoeae MS11

57.643

79.093

0.456
  recA Neisseria gonorrhoeae MS11

57.643

79.093

0.456
  recA Neisseria gonorrhoeae strain FA1090

57.643

79.093

0.456
  recA Vibrio cholerae O1 biovar El Tor strain E7946

53.211

82.368

0.438
  recA Vibrio cholerae strain A1552

53.211

82.368

0.438
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.469

81.612

0.428
  recA Helicobacter pylori strain NCTC11637

51.524

82.62

0.426
  recA Helicobacter pylori 26695

51.524

82.62

0.426

Multiple sequence alignment