Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   L4F93_RS04250 Genome accession   NZ_CP091456
Coordinates   913817..914884 (+) Length   355 a.a.
NCBI ID   WP_250351622.1    Uniprot ID   -
Organism   Avibacterium sp. 20-132     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 908817..919884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L4F93_RS04235 (L4F93_04235) fdrA 910112..911635 (-) 1524 WP_250351268.1 acyl-CoA synthetase FdrA -
  L4F93_RS04240 (L4F93_04240) - 911644..912309 (-) 666 WP_250351269.1 cysteine hydrolase -
  L4F93_RS04245 (L4F93_04245) - 912532..913434 (-) 903 WP_250351270.1 LysR substrate-binding domain-containing protein -
  L4F93_RS04250 (L4F93_04250) recA 913817..914884 (+) 1068 WP_250351622.1 recombinase RecA Machinery gene
  L4F93_RS04255 (L4F93_04255) - 914993..915190 (-) 198 WP_250351271.1 hypothetical protein -
  L4F93_RS04260 (L4F93_04260) - 915210..915476 (-) 267 WP_250351272.1 hypothetical protein -
  L4F93_RS04265 (L4F93_04265) recX 915499..915957 (+) 459 WP_250351273.1 recombination regulator RecX -
  L4F93_RS04270 (L4F93_04270) proS 916094..917809 (+) 1716 WP_250351274.1 proline--tRNA ligase -
  L4F93_RS04275 (L4F93_04275) - 918004..918750 (+) 747 WP_250351275.1 carbonic anhydrase family protein -
  L4F93_RS04280 (L4F93_04280) trmB 918921..919673 (+) 753 WP_250351276.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38329.91 Da        Isoelectric Point: 4.7133

>NTDB_id=651435 L4F93_RS04250 WP_250351622.1 913817..914884(+) (recA) [Avibacterium sp. 20-132]
MTTQEEKQKALAAALGQIEKQFGKGSIMKLGETQELDIESISTGSLGLDIALGIGGLPMGRIVEIYGPESSGKTTLTLSV
IAQAQKLGKTCAFIDAEHALDPIYAAKLGVDVKELLVSQPDNGEEALEICDALVRSGAIEVVIVDSVAALTPKAEIEGDM
GDAHVGLQARLMSQALRKLTGQIKNSNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRVGAVKDGDEIIG
NETRVKVVKNKVAPPFRQVDFQILYGEGISRNGELIELGVKHKLVDKAGAWFSYNGEKIGQGKANAMKWLAEHPEQAQEL
ENKLREELLANPDKSLIADIEADQNAEMAEIDSEF

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=651435 L4F93_RS04250 WP_250351622.1 913817..914884(+) (recA) [Avibacterium sp. 20-132]
ATTACCACTCAAGAAGAAAAACAAAAAGCGCTTGCGGCCGCACTTGGTCAAATTGAAAAGCAATTTGGTAAAGGGTCTAT
TATGAAATTGGGTGAAACCCAAGAATTAGATATTGAATCTATTTCTACAGGATCTCTTGGTTTAGATATCGCCTTAGGTA
TTGGTGGTTTGCCAATGGGACGTATCGTAGAAATTTATGGGCCAGAATCTTCAGGAAAAACCACATTAACCCTTTCTGTT
ATTGCACAAGCACAAAAGTTAGGTAAGACCTGTGCTTTCATTGATGCAGAACACGCGTTAGATCCTATCTATGCGGCAAA
ACTCGGGGTTGATGTAAAAGAATTGCTCGTTTCTCAACCAGATAATGGTGAAGAAGCATTAGAAATCTGTGATGCCTTGG
TTCGTTCTGGTGCGATTGAAGTGGTGATTGTGGATTCTGTCGCTGCACTTACACCAAAAGCAGAAATTGAAGGAGATATG
GGCGATGCACACGTTGGTTTACAAGCGCGCTTAATGTCGCAAGCTTTGCGTAAACTAACGGGGCAAATCAAAAACTCAAA
CTGTTTGGTGATTTTTATCAACCAAATTCGTATGAAAATTGGTGTAATGTTTGGTAACCCAGAAACCACTACGGGTGGTA
ACGCATTAAAATTCTATTCTTCTGTGCGTCTAGATATTCGTCGAGTAGGTGCAGTAAAAGATGGTGATGAAATCATCGGT
AATGAAACACGTGTCAAAGTGGTGAAAAATAAAGTGGCGCCACCATTCCGTCAAGTGGATTTCCAAATCCTTTATGGTGA
AGGAATTTCACGCAACGGTGAATTAATTGAATTAGGTGTAAAACACAAATTAGTTGATAAAGCGGGCGCTTGGTTCTCTT
ATAACGGTGAAAAAATTGGTCAAGGCAAAGCGAATGCGATGAAATGGTTAGCAGAACACCCTGAACAAGCTCAAGAATTA
GAAAATAAATTACGTGAAGAGCTTTTAGCTAATCCAGATAAATCACTCATTGCAGATATTGAAGCCGATCAAAATGCAGA
GATGGCAGAAATAGATTCTGAATTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

76.968

96.62

0.744
  recA Pseudomonas stutzeri DSM 10701

75

96.901

0.727
  recA Vibrio cholerae strain A1552

72.727

99.155

0.721
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.727

99.155

0.721
  recA Acinetobacter baylyi ADP1

68.786

97.465

0.67
  recA Neisseria gonorrhoeae MS11

73.602

90.704

0.668
  recA Neisseria gonorrhoeae MS11

73.602

90.704

0.668
  recA Neisseria gonorrhoeae strain FA1090

73.602

90.704

0.668
  recA Acinetobacter baumannii D1279779

71.472

91.831

0.656
  recA Ralstonia pseudosolanacearum GMI1000

72.698

88.732

0.645
  recA Helicobacter pylori 26695

62.099

96.62

0.6
  recA Helicobacter pylori strain NCTC11637

62.099

96.62

0.6
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.308

91.549

0.589
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.388

94.366

0.589
  recA Streptococcus mitis SK321

57.91

99.718

0.577
  recA Bacillus subtilis subsp. subtilis str. 168

63.665

90.704

0.577
  recA Streptococcus mitis NCTC 12261

57.507

99.437

0.572
  recA Streptococcus pneumoniae Rx1

61.162

92.113

0.563
  recA Streptococcus pneumoniae TIGR4

61.162

92.113

0.563
  recA Streptococcus pneumoniae D39

61.162

92.113

0.563
  recA Streptococcus pneumoniae R6

61.162

92.113

0.563
  recA Streptococcus mutans UA159

61.538

91.549

0.563
  recA Streptococcus pyogenes NZ131

61.231

91.549

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.111

91.268

0.558
  recA Latilactobacillus sakei subsp. sakei 23K

60.248

90.704

0.546
  recA Lactococcus lactis subsp. cremoris KW2

57.716

91.268

0.527