Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | L3475_RS09120 | Genome accession | NZ_CP091451 |
| Coordinates | 1766682..1767848 (-) | Length | 388 a.a. |
| NCBI ID | WP_001085462.1 | Uniprot ID | A0A0B7KZM2 |
| Organism | Streptococcus pneumoniae strain 3238/09 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1759760..1803679 | 1766682..1767848 | within | 0 |
Gene organization within MGE regions
Location: 1759760..1803679
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L3475_RS09075 (L3475_09005) | - | 1760057..1760608 (-) | 552 | WP_001111247.1 | hypothetical protein | - |
| L3475_RS09080 (L3475_09010) | - | 1760598..1760795 (-) | 198 | WP_000890144.1 | hypothetical protein | - |
| L3475_RS09085 (L3475_09015) | - | 1760799..1761593 (-) | 795 | WP_001101215.1 | hypothetical protein | - |
| L3475_RS09090 (L3475_09020) | - | 1762001..1762426 (-) | 426 | WP_000204068.1 | hypothetical protein | - |
| L3475_RS09095 (L3475_09025) | - | 1762555..1762914 (-) | 360 | WP_000749821.1 | ImmA/IrrE family metallo-endopeptidase | - |
| L3475_RS09100 (L3475_09030) | - | 1762960..1763166 (-) | 207 | WP_000366087.1 | hypothetical protein | - |
| L3475_RS09105 (L3475_09035) | - | 1763153..1763314 (-) | 162 | WP_000289348.1 | helix-turn-helix domain-containing protein | - |
| L3475_RS09110 (L3475_09040) | lytA | 1763673..1764629 (-) | 957 | WP_000405240.1 | N-acetylmuramoyl-L-alanine amidase LytA | - |
| L3475_RS09115 (L3475_09045) | - | 1765005..1766375 (-) | 1371 | WP_001036271.1 | MATE family efflux transporter | - |
| L3475_RS09120 (L3475_09050) | recA | 1766682..1767848 (-) | 1167 | WP_001085462.1 | recombinase RecA | Machinery gene |
| L3475_RS09125 (L3475_09055) | cinA | 1767903..1769159 (-) | 1257 | WP_000642704.1 | competence/damage-inducible protein A | Machinery gene |
| L3475_RS09130 (L3475_09060) | brpA | 1769244..1770260 (-) | 1017 | WP_263275208.1 | biofilm formation/cell division transcriptional regulator BrpA | - |
| L3475_RS09135 (L3475_09065) | - | 1770268..1770786 (-) | 519 | WP_000455536.1 | GNAT family N-acetyltransferase | - |
| L3475_RS09140 (L3475_09070) | tsaE | 1770776..1771219 (-) | 444 | WP_000288230.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE | - |
| L3475_RS09145 (L3475_09075) | comM | 1771305..1771925 (-) | 621 | WP_000839909.1 | hypothetical protein | Regulator |
| L3475_RS09150 (L3475_09080) | - | 1772231..1773094 (-) | 864 | WP_001093609.1 | helix-turn-helix domain-containing protein | - |
| L3475_RS09155 | - | 1773286..1773456 (+) | 171 | WP_001227863.1 | PhrA family quorum-sensing system peptide | - |
| L3475_RS09160 (L3475_09085) | - | 1773858..1774172 (+) | 315 | WP_000420682.1 | YdcP family protein | - |
| L3475_RS09165 (L3475_09090) | - | 1774188..1774574 (+) | 387 | WP_000985015.1 | YdcP family protein | - |
| L3475_RS09170 (L3475_09095) | - | 1774603..1775988 (+) | 1386 | WP_000813494.1 | FtsK/SpoIIIE domain-containing protein | - |
| L3475_RS09175 (L3475_09100) | - | 1775991..1776143 (+) | 153 | WP_000879507.1 | hypothetical protein | - |
| L3475_RS09180 (L3475_09105) | mobT | 1776166..1777428 (+) | 1263 | WP_001814870.1 | MobT family relaxase | - |
| L3475_RS09185 (L3475_09110) | - | 1777373..1777585 (+) | 213 | WP_029645760.1 | peptide-binding protein | - |
| L3475_RS09190 (L3475_09115) | - | 1777634..1777717 (+) | 84 | WP_001814874.1 | 23S rRNA methyltransferase attenuation leader peptide | - |
| L3475_RS09195 (L3475_09120) | erm(B) | 1777842..1778579 (+) | 738 | WP_001038795.1 | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | - |
| L3475_RS09200 (L3475_09125) | - | 1778836..1780083 (-) | 1248 | WP_000019067.1 | ISL3 family transposase | - |
| L3475_RS09205 (L3475_09130) | - | 1780263..1780484 (+) | 222 | WP_001009056.1 | hypothetical protein | - |
| L3475_RS09210 (L3475_09135) | - | 1780601..1781098 (+) | 498 | WP_000342539.1 | antirestriction protein ArdA | - |
| L3475_RS09215 (L3475_09140) | - | 1781187..1781579 (+) | 393 | WP_000723888.1 | conjugal transfer protein | - |
| L3475_RS09220 (L3475_09145) | - | 1781563..1784010 (+) | 2448 | WP_000331160.1 | ATP-binding protein | - |
| L3475_RS09225 (L3475_09150) | - | 1784013..1786190 (+) | 2178 | WP_001814875.1 | CD3337/EF1877 family mobilome membrane protein | - |
| L3475_RS09230 (L3475_09155) | - | 1786187..1787188 (+) | 1002 | WP_000769868.1 | lysozyme family protein | - |
| L3475_RS09235 (L3475_09160) | - | 1787185..1788117 (+) | 933 | WP_001224318.1 | conjugal transfer protein | - |
| L3475_RS11100 | - | 1788431..1788478 (+) | 48 | Protein_1812 | hypothetical protein | - |
| L3475_RS09245 (L3475_09170) | tet(M) | 1788494..1790413 (+) | 1920 | WP_000691729.1 | tetracycline resistance ribosomal protection protein Tet(M) | - |
| L3475_RS09250 (L3475_09175) | - | 1790777..1791022 (+) | 246 | WP_001813542.1 | hypothetical protein | - |
| L3475_RS09255 (L3475_09180) | - | 1791019..1791354 (+) | 336 | WP_000806926.1 | hypothetical protein | - |
| L3475_RS09260 (L3475_09185) | - | 1791367..1791735 (+) | 369 | WP_000567222.1 | hypothetical protein | - |
| L3475_RS09265 (L3475_09190) | - | 1791722..1792021 (+) | 300 | WP_001072467.1 | DUF5960 family protein | - |
| L3475_RS09270 (L3475_09195) | msr(D) | 1792139..1793602 (-) | 1464 | WP_000420313.1 | ABC-F type ribosomal protection protein Msr(D) | - |
| L3475_RS09275 (L3475_09200) | mef(A) | 1793722..1794939 (-) | 1218 | WP_000417519.1 | macrolide efflux MFS transporter Mef(A) | - |
| L3475_RS09280 (L3475_09205) | - | 1795325..1795495 (-) | 171 | WP_000873143.1 | hypothetical protein | - |
| L3475_RS09285 (L3475_09210) | - | 1796017..1796208 (+) | 192 | WP_001860868.1 | cysteine-rich KTR domain-containing protein | - |
| L3475_RS09290 (L3475_09215) | - | 1796268..1796621 (-) | 354 | WP_001227347.1 | helix-turn-helix transcriptional regulator | - |
| L3475_RS09295 (L3475_09220) | - | 1797126..1797548 (+) | 423 | WP_000804885.1 | sigma-70 family RNA polymerase sigma factor | - |
| L3475_RS09300 (L3475_09225) | - | 1797545..1797775 (+) | 231 | WP_000857133.1 | helix-turn-helix domain-containing protein | - |
| L3475_RS09305 (L3475_09230) | - | 1798001..1798252 (-) | 252 | WP_001845478.1 | hypothetical protein | - |
| L3475_RS09310 (L3475_09235) | - | 1798236..1798439 (+) | 204 | WP_000814511.1 | excisionase | - |
| L3475_RS09315 (L3475_09240) | - | 1798521..1799738 (+) | 1218 | WP_001291561.1 | tyrosine-type recombinase/integrase | - |
| L3475_RS09320 (L3475_09245) | - | 1800088..1800228 (+) | 141 | WP_000573658.1 | hypothetical protein | - |
| L3475_RS09325 (L3475_09250) | - | 1800629..1802644 (+) | 2016 | WP_000732395.1 | DUF1430 domain-containing protein | - |
| L3475_RS09330 (L3475_09255) | - | 1802646..1803278 (+) | 633 | WP_000571425.1 | ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 388 a.a. Molecular weight: 41949.78 Da Isoelectric Point: 4.8403
>NTDB_id=651346 L3475_RS09120 WP_001085462.1 1766682..1767848(-) (recA) [Streptococcus pneumoniae strain 3238/09]
MAKKPKKLEEISKKFGAEREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGSGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDQKETNVGKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKIGQGSE
NAKKYLAEHPEIFDEIDKQVRSKFGLIDGEEVSEQDTENKKDEPKKEEAVNEEVPLDLGDELEIEIEE
MAKKPKKLEEISKKFGAEREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGSGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDQKETNVGKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKIGQGSE
NAKKYLAEHPEIFDEIDKQVRSKFGLIDGEEVSEQDTENKKDEPKKEEAVNEEVPLDLGDELEIEIEE
Nucleotide
Download Length: 1167 bp
>NTDB_id=651346 L3475_RS09120 WP_001085462.1 1766682..1767848(-) (recA) [Streptococcus pneumoniae strain 3238/09]
ATGGCGAAAAAACCAAAAAAATTAGAAGAAATTTCAAAAAAATTTGGGGCAGAACGTGAAAAGGCCTTGAATGACGCTCT
TAAATTGATTGAGAAAGACTTTGGTAAAGGATCAATCATGCGTTTGGGTGAACGTGCGGAGCAAAAGGTGCAAGTGATGA
GCTCAGGTTCTTTAGCTCTTGACATTGCCCTTGGCTCAGGTGGTTATCCTAAGGGACGTATCATCGAAATCTATGGCCCA
GAGTCATCTGGTAAGACAACGGTTGCCCTTCATGCAGTTGCACAAGCGCAAAAAGAAGGTGGGATTGCTGCCTTTATCGA
TGCGGAACATGCCCTTGATCCAGCTTATGCTGCGGCCCTTGGTGTCAATATTGACGAATTGCTCTTGTCTCAACCAGACT
CAGGAGAGCAAGGTCTTGAGATTGCGGGAAAATTGATTGACTCAGGTGCAGTTGATCTTGTCGTAGTCGACTCAGTTGCT
GCCCTTGTTCCTCGTGCGGAAATTGATGGAGATATCGGAGATAGCCATGTTGGTTTGCAGGCTCGTATGATGAGCCAGGC
CATGCGTAAACTTGGCGCCTCTATCAATAAAACCAAAACAATTGCCATTTTTATCAACCAATTGCGTGAAAAAGTTGGAG
TGATGTTTGGAAATCCAGAAACAACACCGGGCGGACGTGCTTTGAAATTCTATGCTTCAGTCCGCTTGGATGTTCGTGGT
AATACACAAATTAAGGGAACTGGTGATCAAAAAGAAACCAATGTCGGTAAAGAAACTAAGATTAAGGTTGTAAAAAATAA
GGTAGCTCCACCGTTTAAGGAAGCCGTAGTTGAAATTATGTACGGAGAAGGAATTTCTAAGACTGGTGAGCTTTTGAAGA
TTGCAAGCGATTTGGATATTATCAAAAAAGCAGGGGCTTGGTATTCTTACAAAGATGAAAAAATTGGGCAAGGTTCTGAG
AATGCTAAGAAATACTTGGCAGAGCACCCAGAAATCTTTGATGAAATTGATAAGCAAGTCCGTTCTAAATTTGGCTTGAT
TGATGGAGAAGAAGTTTCAGAACAAGATACTGAAAACAAAAAAGATGAGCCAAAGAAAGAAGAAGCAGTGAATGAAGAAG
TTCCGCTTGACTTAGGCGATGAACTTGAAATCGAAATTGAAGAATAA
ATGGCGAAAAAACCAAAAAAATTAGAAGAAATTTCAAAAAAATTTGGGGCAGAACGTGAAAAGGCCTTGAATGACGCTCT
TAAATTGATTGAGAAAGACTTTGGTAAAGGATCAATCATGCGTTTGGGTGAACGTGCGGAGCAAAAGGTGCAAGTGATGA
GCTCAGGTTCTTTAGCTCTTGACATTGCCCTTGGCTCAGGTGGTTATCCTAAGGGACGTATCATCGAAATCTATGGCCCA
GAGTCATCTGGTAAGACAACGGTTGCCCTTCATGCAGTTGCACAAGCGCAAAAAGAAGGTGGGATTGCTGCCTTTATCGA
TGCGGAACATGCCCTTGATCCAGCTTATGCTGCGGCCCTTGGTGTCAATATTGACGAATTGCTCTTGTCTCAACCAGACT
CAGGAGAGCAAGGTCTTGAGATTGCGGGAAAATTGATTGACTCAGGTGCAGTTGATCTTGTCGTAGTCGACTCAGTTGCT
GCCCTTGTTCCTCGTGCGGAAATTGATGGAGATATCGGAGATAGCCATGTTGGTTTGCAGGCTCGTATGATGAGCCAGGC
CATGCGTAAACTTGGCGCCTCTATCAATAAAACCAAAACAATTGCCATTTTTATCAACCAATTGCGTGAAAAAGTTGGAG
TGATGTTTGGAAATCCAGAAACAACACCGGGCGGACGTGCTTTGAAATTCTATGCTTCAGTCCGCTTGGATGTTCGTGGT
AATACACAAATTAAGGGAACTGGTGATCAAAAAGAAACCAATGTCGGTAAAGAAACTAAGATTAAGGTTGTAAAAAATAA
GGTAGCTCCACCGTTTAAGGAAGCCGTAGTTGAAATTATGTACGGAGAAGGAATTTCTAAGACTGGTGAGCTTTTGAAGA
TTGCAAGCGATTTGGATATTATCAAAAAAGCAGGGGCTTGGTATTCTTACAAAGATGAAAAAATTGGGCAAGGTTCTGAG
AATGCTAAGAAATACTTGGCAGAGCACCCAGAAATCTTTGATGAAATTGATAAGCAAGTCCGTTCTAAATTTGGCTTGAT
TGATGGAGAAGAAGTTTCAGAACAAGATACTGAAAACAAAAAAGATGAGCCAAAGAAAGAAGAAGCAGTGAATGAAGAAG
TTCCGCTTGACTTAGGCGATGAACTTGAAATCGAAATTGAAGAATAA
Similar proteins
Only experimentally validated proteins are listed.