Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   L1F29_RS12425 Genome accession   NZ_CP091430
Coordinates   2667748..2668809 (+) Length   353 a.a.
NCBI ID   WP_309252393.1    Uniprot ID   -
Organism   Paenibacillus spongiae strain PHS-Z3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2662748..2673809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1F29_RS12405 (L1F29_12370) - 2663642..2664133 (+) 492 WP_258388618.1 YajQ family cyclic di-GMP-binding protein -
  L1F29_RS12410 (L1F29_12375) rimO 2664270..2665598 (+) 1329 WP_258388619.1 30S ribosomal protein S12 methylthiotransferase RimO -
  L1F29_RS12415 (L1F29_12380) pgsA 2665595..2666173 (+) 579 WP_258388620.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  L1F29_RS12420 (L1F29_12385) - 2666252..2667505 (+) 1254 WP_258388621.1 competence/damage-inducible protein A -
  L1F29_RS12425 (L1F29_12390) recA 2667748..2668809 (+) 1062 WP_309252393.1 recombinase RecA Machinery gene
  L1F29_RS12430 (L1F29_12395) - 2668900..2669592 (+) 693 WP_258388622.1 regulatory protein RecX -
  L1F29_RS12435 (L1F29_12400) rny 2669784..2671325 (+) 1542 WP_258388623.1 ribonuclease Y -
  L1F29_RS12440 (L1F29_12405) - 2671398..2672192 (+) 795 WP_258388624.1 TIGR00282 family metallophosphoesterase -
  L1F29_RS12445 (L1F29_12410) - 2672331..2672591 (+) 261 WP_025335291.1 stage V sporulation protein S -
  L1F29_RS12450 (L1F29_12415) - 2672709..2673656 (+) 948 WP_258388625.1 dipeptidase -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38023.05 Da        Isoelectric Point: 4.6987

>NTDB_id=651137 L1F29_RS12425 WP_309252393.1 2667748..2668809(+) (recA) [Paenibacillus spongiae strain PHS-Z3]
MSDRRAALEMALRQIEKQFGKGSVMKLGESANMQVEIASSGSLALDIALGIGGYPKGRIIEIYGPESSGKTTVALHAIAQ
VQRNGGQAAFIDAEHALDPLYASKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAISKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRRVESIKQGNDMVGNRT
RIKVVKNKVAPPFKQAEVDIMYGEGISKEGSIVDIGVEMDIVQKSGAWFSYNGDRLGQGRENAKQFLKDHPEISDTIEQQ
IRDANNLAAGALNSAAFSNDDDEDEDELELELN

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=651137 L1F29_RS12425 WP_309252393.1 2667748..2668809(+) (recA) [Paenibacillus spongiae strain PHS-Z3]
TTGTCAGATCGTCGCGCAGCTCTCGAGATGGCTCTACGTCAGATCGAGAAACAATTTGGTAAAGGTTCGGTTATGAAGCT
CGGTGAATCTGCTAACATGCAAGTCGAAATTGCATCCAGCGGATCACTCGCATTAGATATTGCTCTTGGAATCGGCGGAT
ATCCGAAGGGCCGCATTATTGAGATTTATGGACCGGAATCATCCGGTAAAACAACCGTCGCGCTTCACGCGATCGCACAA
GTGCAGCGCAATGGTGGACAAGCTGCATTTATCGATGCGGAGCATGCGCTTGACCCGCTTTATGCGAGTAAGCTGGGCGT
CAACATTGATGAACTGCTGCTCTCGCAGCCGGACACGGGCGAACAAGCGCTAGAGATCGCTGAGGCTCTTGTACGCAGCG
GCGCGGTCGATATTATCGTAGTAGACTCCGTCGCGGCTCTGGTACCGAAGGCGGAGATTGAAGGCGAGATGGGCGATTCC
CACGTCGGTCTGCAAGCCCGGCTGATGTCGCAAGCACTTCGCAAGCTTTCCGGTGCCATCAGCAAATCCAAGACAATCGC
GATTTTCATCAACCAGCTGCGTGAGAAGGTTGGGGTTATGTTCGGCAATCCGGAGACAACGCCGGGCGGCCGCGCATTGA
AGTTCTATTCCAGCGTCCGGCTCGACGTACGTCGGGTCGAGTCGATTAAACAGGGGAACGACATGGTCGGCAACCGGACG
CGGATCAAGGTCGTCAAGAACAAGGTAGCACCTCCGTTCAAGCAAGCGGAAGTGGATATCATGTACGGCGAAGGCATCTC
CAAGGAAGGCAGCATCGTCGATATCGGGGTCGAGATGGACATTGTTCAGAAGAGCGGCGCCTGGTTCTCGTACAACGGCG
ACCGTTTGGGACAAGGCCGCGAGAATGCGAAGCAGTTCTTGAAGGATCATCCGGAGATTAGCGATACCATTGAACAACAG
ATTCGCGATGCCAATAACCTTGCTGCTGGTGCATTGAACAGCGCAGCATTCAGCAATGATGACGATGAAGACGAGGACGA
ATTGGAACTCGAATTGAATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

81.651

92.635

0.756
  recA Streptococcus mitis NCTC 12261

66.12

100

0.686
  recA Latilactobacillus sakei subsp. sakei 23K

73.006

92.351

0.674
  recA Streptococcus pyogenes NZ131

72.531

91.785

0.666
  recA Streptococcus pneumoniae R6

70.27

94.334

0.663
  recA Streptococcus pneumoniae Rx1

70.27

94.334

0.663
  recA Streptococcus pneumoniae D39

70.27

94.334

0.663
  recA Streptococcus pneumoniae TIGR4

70.27

94.334

0.663
  recA Streptococcus mutans UA159

71.605

91.785

0.657
  recA Streptococcus mitis SK321

70.769

92.068

0.652
  recA Lactococcus lactis subsp. cremoris KW2

69.091

93.484

0.646
  recA Pseudomonas stutzeri DSM 10701

63.372

97.45

0.618
  recA Neisseria gonorrhoeae MS11

66.871

92.351

0.618
  recA Neisseria gonorrhoeae MS11

66.871

92.351

0.618
  recA Neisseria gonorrhoeae strain FA1090

66.871

92.351

0.618
  recA Acinetobacter baumannii D1279779

62.464

98.867

0.618
  recA Acinetobacter baylyi ADP1

62

99.15

0.615
  recA Glaesserella parasuis strain SC1401

61.538

99.433

0.612
  recA Vibrio cholerae strain A1552

66.978

90.935

0.609
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.978

90.935

0.609
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.029

97.734

0.606
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.914

92.635

0.592
  recA Ralstonia pseudosolanacearum GMI1000

62.727

93.484

0.586
  recA Helicobacter pylori 26695

62.848

91.501

0.575
  recA Helicobacter pylori strain NCTC11637

62.539

91.501

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.112

91.218

0.567