Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   L3D22_RS15010 Genome accession   NZ_CP091317
Coordinates   3320911..3321945 (-) Length   344 a.a.
NCBI ID   WP_192630299.1    Uniprot ID   -
Organism   Lysobacter soli strain RCu6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3315911..3326945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3D22_RS14995 (L3D22_14995) csrA 3317064..3317270 (-) 207 WP_253336234.1 carbon storage regulator CsrA -
  L3D22_RS15000 (L3D22_15000) alaS 3317407..3320040 (-) 2634 WP_253336235.1 alanine--tRNA ligase -
  L3D22_RS15005 (L3D22_15005) recX 3320367..3320873 (-) 507 WP_192630300.1 recombination regulator RecX -
  L3D22_RS15010 (L3D22_15010) recA 3320911..3321945 (-) 1035 WP_192630299.1 recombinase RecA Machinery gene
  L3D22_RS15015 (L3D22_15015) lexA 3322187..3322843 (-) 657 WP_115840757.1 transcriptional repressor LexA -
  L3D22_RS15020 (L3D22_15020) - 3322912..3323412 (-) 501 WP_115840758.1 CinA family protein -
  L3D22_RS15025 (L3D22_15025) mutS 3323557..3326133 (+) 2577 WP_253336236.1 DNA mismatch repair protein MutS -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37232.69 Da        Isoelectric Point: 5.0694

>NTDB_id=649127 L3D22_RS15010 WP_192630299.1 3320911..3321945(-) (recA) [Lysobacter soli strain RCu6]
MDDNKKRALSAALGQIEKQFGKGSVMRMGDRTIEATEVIGTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
QCQKAGGTCAFIDAEHALDPIYAAKLGVNVDDLLVSQPDTGEQALEIADMLVRSAAVDMVVVDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNCLVIFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGSIKKGDEIIG
NQTRIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVEKSGAWYSAYDERIGQGKENARQYLKENPHVAERL
ETALREKFVPAEANRSEEDDAQDD

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=649127 L3D22_RS15010 WP_192630299.1 3320911..3321945(-) (recA) [Lysobacter soli strain RCu6]
ATGGACGACAACAAGAAGCGCGCGCTCTCAGCCGCACTGGGCCAGATCGAAAAGCAGTTCGGCAAGGGCTCGGTGATGCG
CATGGGCGATCGCACGATCGAAGCGACGGAAGTCATCGGTACCGGCTCGCTGATGCTCGACATCGCGCTGGGCATCGGCG
GCCTGCCGAAGGGCCGCGTCGTCGAGATCTACGGCCCGGAATCCTCGGGCAAGACCACCCTCACGCTGCAGGCCATCGCC
CAGTGCCAGAAGGCCGGCGGCACCTGCGCCTTCATCGACGCCGAGCACGCGCTCGATCCCATCTACGCCGCCAAGCTCGG
CGTCAACGTCGACGACCTGCTGGTCAGCCAGCCGGACACGGGCGAGCAGGCGCTGGAGATCGCCGACATGCTCGTGCGCT
CGGCGGCGGTCGACATGGTCGTGGTCGACTCCGTCGCCGCGCTGACCCCGAAGGCCGAAATCGAAGGCGAGATGGGCGAC
CAGCTGCCGGGCCTGCAGGCGCGACTGATGAGCCAGGCGCTGCGCAAGCTCACCGGCAACATCAAGCGCTCGAACTGCCT
GGTGATCTTCATCAACCAGCTGCGCATGAAGATCGGCGTGATGATGCCGGGCCAGAGCCCGGAAACCACCACCGGCGGCA
ACGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATCGGTTCGATCAAGAAAGGCGACGAGATCATCGGC
AACCAGACCCGCATCAAGGTGGTCAAGAACAAGCTGGCGCCGCCGTTCAAGCAGGTCGTCACCGAAATCCTTTACGGCGA
AGGCATCTCGCGCGAAGGCGAGCTGATCGACATGGGCGTGGAGGCCAAGCTGGTCGAGAAGTCTGGCGCCTGGTACAGCG
CGTACGACGAGCGCATCGGACAGGGCAAGGAAAACGCCCGCCAGTACCTGAAGGAAAATCCGCATGTCGCGGAGCGCTTG
GAAACGGCCCTGCGCGAGAAGTTCGTGCCGGCCGAAGCCAACCGCAGCGAGGAAGACGACGCTCAGGACGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

72.303

99.709

0.721
  recA Ralstonia pseudosolanacearum GMI1000

72.404

97.965

0.709
  recA Vibrio cholerae strain A1552

70.231

100

0.706
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.231

100

0.706
  recA Acinetobacter baylyi ADP1

71.176

98.837

0.703
  recA Acinetobacter baumannii D1279779

71.557

97.093

0.695
  recA Neisseria gonorrhoeae MS11

69.632

94.767

0.66
  recA Neisseria gonorrhoeae MS11

69.632

94.767

0.66
  recA Neisseria gonorrhoeae strain FA1090

69.632

94.767

0.66
  recA Glaesserella parasuis strain SC1401

65.698

100

0.657
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.081

100

0.631
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.063

96.802

0.61
  recA Helicobacter pylori 26695

62.883

94.767

0.596
  recA Helicobacter pylori strain NCTC11637

62.577

94.767

0.593
  recA Latilactobacillus sakei subsp. sakei 23K

59.649

99.419

0.593
  recA Bacillus subtilis subsp. subtilis str. 168

62.769

94.477

0.593
  recA Streptococcus pneumoniae D39

58.601

99.709

0.584
  recA Streptococcus pneumoniae R6

58.601

99.709

0.584
  recA Streptococcus pneumoniae TIGR4

58.601

99.709

0.584
  recA Streptococcus pneumoniae Rx1

58.601

99.709

0.584
  recA Streptococcus mutans UA159

58.529

98.837

0.578
  recA Streptococcus mitis SK321

60.061

95.349

0.573
  recA Streptococcus pyogenes NZ131

59.394

95.93

0.57
  recA Streptococcus mitis NCTC 12261

59.756

95.349

0.57
  recA Lactococcus lactis subsp. cremoris KW2

59.385

94.477

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.841

95.349

0.561