Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   L3C66_RS09525 Genome accession   NZ_CP091294
Coordinates   2033208..2034350 (-) Length   380 a.a.
NCBI ID   WP_218422820.1    Uniprot ID   -
Organism   Lactiplantibacillus plantarum subsp. plantarum strain GR1186     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2028208..2039350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3C66_RS09515 (L3C66_09515) - 2030487..2031293 (-) 807 WP_003641506.1 TIGR00282 family metallophosphoesterase -
  L3C66_RS09520 (L3C66_09520) rny 2031418..2032977 (-) 1560 WP_003644638.1 ribonuclease Y -
  L3C66_RS09525 (L3C66_09525) recA 2033208..2034350 (-) 1143 WP_218422820.1 recombinase RecA Machinery gene
  L3C66_RS09530 (L3C66_09530) cinA 2034442..2035704 (-) 1263 WP_044431233.1 competence/damage-inducible protein A Machinery gene
  L3C66_RS09535 (L3C66_09535) pgsA 2035976..2036560 (-) 585 WP_003641502.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  L3C66_RS09540 (L3C66_09540) - 2036583..2037455 (-) 873 WP_003641501.1 helix-turn-helix domain-containing protein -
  L3C66_RS09545 (L3C66_09545) yfmH 2037559..2038860 (-) 1302 WP_003644640.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 380 a.a.        Molecular weight: 40667.93 Da        Isoelectric Point: 5.3835

>NTDB_id=648993 L3C66_RS09525 WP_218422820.1 2033208..2034350(-) (recA) [Lactiplantibacillus plantarum subsp. plantarum strain GR1186]
MADARKAALDTALKKIEKNFGKGAIMRMGDAAQTTISTISSGSLALDDALGVGGYPRGRIVEIYGPESSGKTTVALHAVA
EVQKQGGTAAYIDAENALDPVYAEHLGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDILVVDSVAALVPRAEIEGEMGD
AHVGLQARLMSQALRKLSGTLNKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYATIRLEVRRAEQIKEGTNIIGNR
VRIKVVKNKVAPPFKRAEVDIMYGQGISQTGEIVDMAAEKDIVKKSGSWYSYGDDRIGQGRENSKKYLDEHPDVMTEIRQ
KVRDAYGMDATGEETSETDDQAKEAKDKGTAKNGSKGQSKSTKATPAETALDLGDQPTEK

Nucleotide


Download         Length: 1143 bp        

>NTDB_id=648993 L3C66_RS09525 WP_218422820.1 2033208..2034350(-) (recA) [Lactiplantibacillus plantarum subsp. plantarum strain GR1186]
TTGGCTGATGCACGGAAAGCAGCACTAGATACTGCCCTGAAAAAGATCGAAAAGAATTTCGGTAAAGGGGCGATTATGCG
GATGGGTGACGCTGCCCAGACGACTATTTCAACGATTTCAAGTGGATCGTTGGCCTTAGATGACGCGTTGGGTGTCGGCG
GCTACCCACGTGGTCGGATCGTGGAAATCTACGGTCCTGAAAGTTCAGGTAAAACGACCGTGGCACTACATGCGGTTGCT
GAAGTTCAAAAGCAGGGTGGTACGGCGGCCTATATCGATGCTGAAAACGCACTAGACCCCGTTTATGCGGAACACCTAGG
GGTCAACATTGATGACCTGTTACTTTCGCAACCAGATACTGGTGAACAAGGGCTTGAAATTGCAGATGCCTTAGTTTCCA
GTGGTGCGGTCGATATTTTAGTTGTTGACTCGGTGGCGGCCTTAGTGCCACGTGCCGAAATTGAAGGTGAAATGGGTGAC
GCACACGTTGGGTTACAAGCGCGGCTGATGTCACAAGCGCTCCGGAAGTTATCAGGGACATTGAACAAAACCAAGACAAT
CGCGTTATTTATCAATCAAATTCGTGAAAAAGTTGGTGTGATGTTTGGTAATCCTGAAACGACTCCTGGTGGTCGGGCCT
TGAAATTTTACGCCACGATTCGTTTGGAAGTACGGCGGGCAGAACAGATCAAGGAAGGAACCAATATTATTGGTAACCGT
GTCCGGATCAAAGTCGTTAAGAACAAGGTTGCACCGCCATTTAAGCGTGCCGAAGTGGATATCATGTATGGTCAAGGTAT
CTCACAAACTGGTGAAATTGTTGATATGGCTGCTGAAAAGGATATTGTTAAGAAGAGTGGTTCTTGGTATTCATATGGTG
ACGATCGCATTGGTCAAGGCCGTGAAAATTCCAAGAAGTATTTGGACGAGCATCCTGATGTCATGACGGAGATTCGCCAA
AAGGTTCGTGATGCATACGGTATGGATGCAACTGGTGAAGAAACGTCTGAAACTGATGATCAGGCCAAAGAAGCTAAGGA
TAAGGGAACTGCTAAGAATGGCAGTAAGGGTCAAAGTAAGTCCACTAAAGCGACACCAGCGGAAACTGCTCTCGATCTCG
GCGACCAACCAACCGAAAAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

84.118

89.474

0.753
  recA Bacillus subtilis subsp. subtilis str. 168

74.398

87.368

0.65
  recA Streptococcus pneumoniae D39

64.721

99.211

0.642
  recA Streptococcus pneumoniae R6

64.721

99.211

0.642
  recA Streptococcus pneumoniae TIGR4

64.721

99.211

0.642
  recA Streptococcus pneumoniae Rx1

64.721

99.211

0.642
  recA Streptococcus mitis SK321

63.13

99.211

0.626
  recA Streptococcus mitis NCTC 12261

62.865

99.211

0.624
  recA Streptococcus pyogenes NZ131

66.006

92.895

0.613
  recA Streptococcus mutans UA159

65.352

93.421

0.611
  recA Lactococcus lactis subsp. cremoris KW2

68.902

86.316

0.595
  recA Ralstonia pseudosolanacearum GMI1000

61.337

90.526

0.555
  recA Neisseria gonorrhoeae MS11

60.231

91.316

0.55
  recA Neisseria gonorrhoeae MS11

60.231

91.316

0.55
  recA Neisseria gonorrhoeae strain FA1090

60.231

91.316

0.55
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.593

90.526

0.539
  recA Vibrio cholerae strain A1552

59.593

90.526

0.539
  recA Acinetobacter baylyi ADP1

59.13

90.789

0.537
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.154

85.526

0.532
  recA Pseudomonas stutzeri DSM 10701

62.229

85

0.529
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.971

90.789

0.526
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.061

86.316

0.518
  recA Acinetobacter baumannii D1279779

59.877

85.263

0.511
  recA Helicobacter pylori strain NCTC11637

56.891

89.737

0.511
  recA Glaesserella parasuis strain SC1401

59.938

84.737

0.508
  recA Helicobacter pylori 26695

58.642

85.263

0.5