Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG800_RS38985 Genome accession   NZ_CP107914
Coordinates   8499379..8500020 (+) Length   213 a.a.
NCBI ID   WP_328367204.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00445     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8494379..8505020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG800_RS38965 (OG800_38940) - 8495197..8495973 (-) 777 WP_328367193.1 transglycosylase SLT domain-containing protein -
  OG800_RS38970 (OG800_38945) - 8496274..8497350 (-) 1077 WP_328367196.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  OG800_RS38975 (OG800_38950) - 8497347..8498042 (-) 696 WP_328367199.1 SDR family oxidoreductase -
  OG800_RS38980 (OG800_38955) - 8498241..8499386 (+) 1146 WP_328367202.1 GAF domain-containing sensor histidine kinase -
  OG800_RS38985 (OG800_38960) vraR 8499379..8500020 (+) 642 WP_328367204.1 response regulator transcription factor Regulator
  OG800_RS38990 (OG800_38965) chpE 8500177..8500422 (+) 246 WP_210575544.1 chaplin ChpE -
  OG800_RS38995 (OG800_38970) - 8500513..8501301 (-) 789 WP_328367206.1 hypothetical protein -
  OG800_RS39000 (OG800_38975) - 8501441..8502232 (+) 792 WP_328367208.1 ABC transporter ATP-binding protein -
  OG800_RS39005 (OG800_38980) - 8502317..8502748 (+) 432 WP_328367211.1 NfeD family protein -
  OG800_RS39010 (OG800_38985) - 8502906..8503856 (+) 951 WP_210575536.1 SPFH domain-containing protein -
  OG800_RS39015 (OG800_38990) - 8503947..8504453 (-) 507 WP_210575534.1 HNH endonuclease -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 22982.24 Da        Isoelectric Point: 5.3711

>NTDB_id=648993 OG800_RS38985 WP_328367204.1 8499379..8500020(+) (vraR) [Streptomyces sp. NBC_00445]
MGDAIRVLLVDDHQVVRRGLRTFLEVQDDIEVVGEAADGAEGVARTEELKPDVVLMDVKMPGMDGVDALRRLRELNNPAR
VLIVTSFTEQRTVVPALRAGAAGYVYKDIDPDALAGAIRSVHAGHILLQPEVAGALLSQEEANSGQGRAGSLTEREREVL
SLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGVAG

Nucleotide


Download         Length: 642 bp        

>NTDB_id=648993 OG800_RS38985 WP_328367204.1 8499379..8500020(+) (vraR) [Streptomyces sp. NBC_00445]
GTGGGTGACGCAATCAGGGTGCTGCTCGTCGACGACCACCAGGTGGTCCGCCGTGGCCTGCGCACGTTCCTCGAAGTGCA
GGACGACATCGAGGTCGTGGGCGAGGCAGCGGACGGCGCCGAAGGAGTCGCGCGCACCGAGGAATTGAAGCCCGACGTCG
TCCTCATGGATGTCAAGATGCCGGGCATGGACGGCGTCGACGCGCTGCGCAGACTCCGCGAACTGAACAACCCCGCGCGC
GTGCTCATCGTCACCAGCTTCACCGAACAGCGCACGGTGGTCCCGGCCCTGCGCGCCGGTGCCGCCGGCTATGTCTACAA
GGACATCGACCCCGACGCCCTCGCCGGCGCCATCCGCTCCGTGCACGCCGGCCACATCCTGCTCCAGCCCGAGGTCGCGG
GCGCCCTGCTGTCCCAGGAGGAGGCCAACTCGGGCCAGGGCAGAGCCGGTTCGCTCACGGAACGGGAGCGCGAAGTGCTG
AGCCTGATAGCCGACGGCCGCTCCAACCGGGAGATCGCCCGCGCCCTGGTCCTCTCCGAGAAGACGGTGAAGACCCATGT
GTCGAACATCCTGATGAAGCTCGACCTGGCGGACCGAACCCAGGCCGCGCTGTGGGCAGTACGCCATGGTGTGGCCGGAT
AA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(151-206)

Response regulator receiver domain (Response_reg)

(7-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.972

99.061

0.455
  degU Bacillus subtilis subsp. subtilis str. 168

38.462

100

0.399