Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   L2Y54_RS15235 Genome accession   NZ_CP091244
Coordinates   3049359..3050414 (-) Length   351 a.a.
NCBI ID   WP_236497274.1    Uniprot ID   -
Organism   Thiothrix winogradskyi strain CT3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3044359..3055414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Y54_RS15215 (L2Y54_15220) csrA 3044544..3044744 (-) 201 WP_093065793.1 carbon storage regulator CsrA -
  L2Y54_RS15220 (L2Y54_15225) - 3045011..3046243 (-) 1233 WP_236497269.1 aspartate kinase -
  L2Y54_RS15225 (L2Y54_15230) alaS 3046276..3048912 (-) 2637 WP_236497271.1 alanine--tRNA ligase -
  L2Y54_RS15230 (L2Y54_15235) - 3048909..3049349 (-) 441 WP_236497273.1 regulatory protein RecX -
  L2Y54_RS15235 (L2Y54_15240) recA 3049359..3050414 (-) 1056 WP_236497274.1 recombinase RecA Machinery gene
  L2Y54_RS15240 (L2Y54_15245) - 3050586..3051047 (+) 462 WP_236497276.1 Uma2 family endonuclease -
  L2Y54_RS15245 (L2Y54_15250) - 3051054..3053123 (-) 2070 WP_236502044.1 DEAD/DEAH box helicase -
  L2Y54_RS15250 (L2Y54_15255) - 3053083..3054093 (-) 1011 WP_236497277.1 SWIM zinc finger family protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37332.68 Da        Isoelectric Point: 5.1727

>NTDB_id=648794 L2Y54_RS15235 WP_236497274.1 3049359..3050414(-) (recA) [Thiothrix winogradskyi strain CT3]
MDENKKKALAAALGQIERQFGKGTVMRMGDSSAARDIDVISTGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQVI
AECQKMGGTAAFIDAEHALDPIYAQKIGVNVDDLLVSQPDNGEQALEIADMLVRSNAVDIVVVDSVAALTPKAEIEGDMG
DSHVGLQARLMSQALRKLTGNIKRSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKKGEEITGS
ETRVKVVKNKVAPPFKQAEFEILYGEGISREGELVDLGVKQGLVGKAGAWYSYKGDKIGQGKDNARNYLKEHPAAAAEIE
KAIREACMNAPGFAATVTEEADSDAGLDDVV

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=648794 L2Y54_RS15235 WP_236497274.1 3049359..3050414(-) (recA) [Thiothrix winogradskyi strain CT3]
ATGGACGAGAACAAAAAGAAAGCCCTCGCCGCCGCCCTAGGCCAGATTGAACGTCAGTTTGGCAAAGGCACTGTGATGCG
CATGGGCGACTCCAGTGCTGCCCGTGACATCGACGTGATTTCCACCGGCTCTCTGGGGCTGGACATTGCCCTTGGTATCG
GCGGTCTGCCCAAAGGACGTGTCGTCGAAATTTACGGCCCGGAATCTTCCGGTAAAACTACCCTGACGCTGCAAGTGATC
GCCGAATGCCAAAAAATGGGCGGCACAGCGGCGTTCATTGATGCGGAACACGCGCTTGACCCGATTTACGCGCAAAAAAT
CGGCGTTAACGTCGATGACTTGCTGGTTTCCCAGCCAGACAATGGCGAACAAGCCTTGGAAATCGCCGATATGCTGGTGC
GTTCCAATGCGGTCGACATCGTGGTGGTCGACTCGGTAGCAGCGTTGACCCCCAAAGCGGAAATCGAAGGCGATATGGGC
GATTCCCACGTCGGCTTGCAAGCACGGTTAATGTCACAAGCCCTGCGCAAACTTACCGGCAATATCAAGCGTTCCAACAC
ATTGGTTATTTTCATCAACCAGATTCGGATGAAAATCGGTGTGATGTTCGGCAACCCAGAAACGACTACGGGCGGTAACG
CGCTGAAATTCTACGCTTCCGTGCGTCTCGATATTCGCCGCATTGGTGCGATTAAGAAGGGCGAGGAAATTACCGGCTCT
GAAACTCGCGTCAAAGTGGTCAAGAACAAGGTTGCGCCACCGTTTAAACAAGCCGAATTTGAAATTCTGTATGGCGAAGG
TATTTCCCGCGAAGGCGAATTGGTTGACCTCGGTGTCAAGCAAGGGCTGGTCGGCAAAGCTGGCGCATGGTACAGCTACA
AAGGCGACAAAATCGGTCAAGGCAAGGACAATGCCCGCAATTACCTGAAAGAGCATCCGGCTGCGGCGGCTGAAATTGAA
AAAGCTATCCGCGAAGCTTGCATGAATGCGCCCGGTTTTGCTGCCACTGTTACCGAAGAAGCCGACAGCGATGCCGGTCT
TGACGACGTGGTGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

76.945

98.86

0.761
  recA Acinetobacter baylyi ADP1

72.046

98.86

0.712
  recA Acinetobacter baumannii D1279779

75.915

93.447

0.709
  recA Vibrio cholerae strain A1552

70.857

99.715

0.707
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.857

99.715

0.707
  recA Glaesserella parasuis strain SC1401

69.591

97.436

0.678
  recA Neisseria gonorrhoeae MS11

73.457

92.308

0.678
  recA Neisseria gonorrhoeae MS11

73.457

92.308

0.678
  recA Neisseria gonorrhoeae strain FA1090

73.457

92.308

0.678
  recA Ralstonia pseudosolanacearum GMI1000

72.036

93.732

0.675
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.502

93.162

0.638
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.653

93.732

0.615
  recA Helicobacter pylori strain NCTC11637

65.749

93.162

0.613
  recA Helicobacter pylori 26695

65.443

93.162

0.61
  recA Bacillus subtilis subsp. subtilis str. 168

65.217

91.738

0.598
  recA Streptococcus mutans UA159

63.19

92.877

0.587
  recA Streptococcus pneumoniae D39

63.58

92.308

0.587
  recA Streptococcus pneumoniae Rx1

63.58

92.308

0.587
  recA Streptococcus pneumoniae R6

63.58

92.308

0.587
  recA Streptococcus pneumoniae TIGR4

63.58

92.308

0.587
  recA Streptococcus pyogenes NZ131

62.883

92.877

0.584
  recA Streptococcus mitis SK321

62.654

92.308

0.578
  recA Latilactobacillus sakei subsp. sakei 23K

62.346

92.308

0.576
  recA Streptococcus mitis NCTC 12261

62.346

92.308

0.576
  recA Lactococcus lactis subsp. cremoris KW2

60.736

92.877

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.878

93.732

0.561