Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SCAZ3_RS04010 Genome accession   NZ_AIDX01000001
Coordinates   882806..883942 (-) Length   378 a.a.
NCBI ID   WP_003045726.1    Uniprot ID   A0AAV3FUY3
Organism   Streptococcus canis FSL Z3-227     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 877806..888942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCAZ3_RS03985 (SCAZ3_11055) - 878995..880554 (-) 1560 WP_003045711.1 hypothetical protein -
  SCAZ3_RS12385 (SCAZ3_11060) - 880694..880819 (-) 126 WP_257865518.1 hypothetical protein -
  SCAZ3_RS03990 (SCAZ3_11065) - 880897..881202 (-) 306 WP_003045716.1 DUF1292 domain-containing protein -
  SCAZ3_RS03995 (SCAZ3_11070) ruvX 881213..881632 (-) 420 WP_039994721.1 Holliday junction resolvase RuvX -
  SCAZ3_RS04000 (SCAZ3_11075) - 881629..881898 (-) 270 WP_003045720.1 IreB family regulatory phosphoprotein -
  SCAZ3_RS04005 (SCAZ3_11080) spx 882010..882408 (-) 399 WP_003045722.1 transcriptional regulator Spx -
  SCAZ3_RS04010 (SCAZ3_11090) recA 882806..883942 (-) 1137 WP_003045726.1 recombinase RecA Machinery gene
  SCAZ3_RS04015 (SCAZ3_11095) cinA 884047..885318 (-) 1272 WP_003045727.1 competence/damage-inducible protein A Machinery gene
  SCAZ3_RS12390 - 885435..885593 (-) 159 WP_223824822.1 VOC family protein -
  SCAZ3_RS04025 (SCAZ3_11105) - 885791..886363 (-) 573 WP_003045731.1 DNA-3-methyladenine glycosylase I -
  SCAZ3_RS04030 (SCAZ3_11110) ruvA 886373..886969 (-) 597 WP_003045733.1 Holliday junction branch migration protein RuvA -
  SCAZ3_RS04035 (SCAZ3_11115) - 886953..888191 (-) 1239 WP_003045734.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 40646.24 Da        Isoelectric Point: 4.8389

>NTDB_id=64769 SCAZ3_RS04010 WP_003045726.1 882806..883942(-) (recA) [Streptococcus canis FSL Z3-227]
MAKKLKKNEEITKKFGDERRKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
TTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELVKIASDLDIIQKAGAWFSYNGEKIGQGSE
NAKRYLADHPELFDDIDRKVRVKFGLLEDAEEESVTTAASEEMDDLVLDLDNGIEIED

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=64769 SCAZ3_RS04010 WP_003045726.1 882806..883942(-) (recA) [Streptococcus canis FSL Z3-227]
TTGGCAAAAAAATTGAAAAAAAACGAAGAAATCACGAAAAAATTCGGTGACGAACGTCGCAAAGCGCTTGATGATGCTTT
GAAAAATATTGAAAAAGACTTTGGCAAAGGTGCGGTAATGCGCCTTGGAGAACGTGCGGAGCAAAAGGTACAAGTCATGA
GTTCAGGAAGTCTGGCTCTCGATATTGCTCTTGGGGCAGGCGGTTATCCTAAAGGGCGTATTATTGAAATTTACGGACCA
GAATCTTCAGGTAAAACGACTGTAGCTCTTCACGCTGTAGCCCAAGCACAAAAAGAGGGGGGCATCGCAGCCTTTATTGA
TGCCGAGCATGCGCTTGATCCAGCTTACGCTGCTGCGCTTGGGGTTAATATTGACGAGTTACTTTTATCTCAACCAGATT
CTGGTGAGCAAGGCCTTGAAATTGCTGGTAAATTAATTGATTCTGGTGCGGTTGACTTGGTTGTTGTCGATTCAGTAGCA
GCTTTAGTGCCACGTGCTGAAATTGATGGTGATATTGGCGATAGCCATGTCGGATTGCAAGCACGTATGATGAGTCAGGC
GATGCGTAAGCTATCAGCTTCTATTAACAAAACAAAAACTATCGCTATCTTTATTAACCAATTGCGTGAAAAAGTTGGGG
TGATGTTTGGTAATCCAGAAACAACACCAGGTGGTCGTGCCCTGAAATTCTATGCTTCTGTTCGGTTGGATGTGCGTGGA
ACTACTCAAATTAAGGGAACGGGTGACCAAAAAGATAGCAGTATTGGTAAGGAGACCAAAATCAAGGTTGTTAAAAACAA
GGTTGCTCCCCCATTTAAGGTAGCAGAAGTTGAAATCATGTATGGAGAAGGCATTTCTCGTACTGGAGAGCTTGTGAAAA
TTGCTTCTGATTTAGATATTATTCAAAAAGCAGGCGCTTGGTTCTCTTACAATGGTGAGAAAATTGGCCAAGGTTCCGAA
AATGCTAAGCGTTATTTGGCGGATCATCCAGAATTATTTGATGACATTGACCGTAAAGTTCGTGTCAAATTTGGCTTGTT
AGAAGATGCTGAGGAAGAATCTGTTACGACAGCAGCATCAGAAGAGATGGATGATCTTGTTCTAGATTTAGACAATGGTA
TTGAAATTGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pyogenes NZ131

97.09

100

0.971
  recA Streptococcus mutans UA159

87.728

100

0.889
  recA Streptococcus pneumoniae D39

84.416

100

0.86
  recA Streptococcus pneumoniae R6

84.416

100

0.86
  recA Streptococcus pneumoniae TIGR4

84.416

100

0.86
  recA Streptococcus pneumoniae Rx1

84.416

100

0.86
  recA Streptococcus mitis SK321

85.039

100

0.857
  recA Streptococcus mitis NCTC 12261

84.777

100

0.854
  recA Lactococcus lactis subsp. cremoris KW2

78.47

93.386

0.733
  recA Latilactobacillus sakei subsp. sakei 23K

68.857

92.593

0.638
  recA Bacillus subtilis subsp. subtilis str. 168

68.085

87.037

0.593
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.018

89.153

0.553
  recA Neisseria gonorrhoeae MS11

59.599

92.328

0.55
  recA Neisseria gonorrhoeae MS11

59.599

92.328

0.55
  recA Neisseria gonorrhoeae strain FA1090

59.599

92.328

0.55
  recA Acinetobacter baumannii D1279779

59.259

92.857

0.55
  recA Acinetobacter baylyi ADP1

59.259

92.857

0.55
  recA Vibrio cholerae strain A1552

58.286

92.593

0.54
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.286

92.593

0.54
  recA Glaesserella parasuis strain SC1401

60

89.947

0.54
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.539

85.45

0.534
  recA Pseudomonas stutzeri DSM 10701

56.16

92.328

0.519
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.912

87.566

0.516
  recA Helicobacter pylori strain NCTC11637

57.879

87.302

0.505
  recA Helicobacter pylori 26695

57.879

87.302

0.505
  recA Ralstonia pseudosolanacearum GMI1000

58.991

83.862

0.495

Multiple sequence alignment