Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   L1S38_RS04870 Genome accession   NZ_CP091081
Coordinates   997670..998728 (+) Length   352 a.a.
NCBI ID   WP_008499546.1    Uniprot ID   A0A0F0QVB9
Organism   Enterobacter roggenkampii strain GD21SC1505     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 992670..1003728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1S38_RS04845 (L1S38_04845) mltB 993142..994242 (+) 1101 WP_170228729.1 lytic murein transglycosylase B -
  L1S38_RS04850 (L1S38_04850) - 994543..995196 (+) 654 WP_059359419.1 ATP-binding cassette domain-containing protein -
  L1S38_RS04855 (L1S38_04855) - 995193..996053 (+) 861 WP_021241951.1 metal ABC transporter permease -
  L1S38_RS04860 (L1S38_04860) - 996068..996952 (+) 885 WP_021241952.1 metal ABC transporter substrate-binding protein -
  L1S38_RS04865 (L1S38_04865) pncC 997083..997580 (+) 498 WP_008499547.1 nicotinamide-nucleotide amidase -
  L1S38_RS04870 (L1S38_04870) recA 997670..998728 (+) 1059 WP_008499546.1 recombinase RecA Machinery gene
  L1S38_RS04875 (L1S38_04875) recX 998797..999297 (+) 501 WP_059359421.1 recombination regulator RecX -
  L1S38_RS04880 (L1S38_04880) alaS 999429..1002056 (+) 2628 WP_059359423.1 alanine--tRNA ligase -
  L1S38_RS04885 (L1S38_04885) csrA 1002298..1002483 (+) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37896.34 Da        Isoelectric Point: 4.8134

>NTDB_id=647550 L1S38_RS04870 WP_008499546.1 997670..998728(+) (recA) [Enterobacter roggenkampii strain GD21SC1505]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRTMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGDKIGQGKANAISWLKENPAAAKEI
EKKVRELLLNNQDSKPDFVVDAADAEETNEDF

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=647550 L1S38_RS04870 WP_008499546.1 997670..998728(+) (recA) [Enterobacter roggenkampii strain GD21SC1505]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTACCATGGATGTGGAAACGATCTCCACCGGTTCGCTTTCTCTGGATATCGCGCTGGGCG
CGGGCGGCCTGCCAATGGGCCGTATCGTAGAGATCTACGGGCCAGAATCCTCCGGTAAAACTACCCTGACGCTGCAGGTG
ATTGCTGCGGCACAGCGCGAAGGTAAAACCTGTGCGTTCATCGATGCCGAGCACGCGCTGGATCCTGTTTATGCGCGTAA
GCTGGGCGTGGACATCGACAACCTGCTCTGTTCTCAGCCGGACACCGGTGAGCAGGCGCTGGAAATTTGTGACGCGCTGG
CGCGCTCCGGTGCGGTTGACGTTATCGTTGTTGACTCCGTTGCCGCACTGACGCCAAAAGCGGAAATCGAAGGTGAAATC
GGCGACTCTCACATGGGCCTCGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCCGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACAACCGGTGGTA
ACGCCCTGAAATTCTACGCGTCTGTCCGTCTGGATATCCGCCGTATCGGTGCGGTGAAAGAGGGTGAAAACGTCGTCGGT
AGCGAAACCCGCGTGAAGGTGGTGAAGAACAAAATCGCTGCACCGTTCAAACAGGCTGAGTTCCAGATCCTCTACGGTGA
AGGGATCAACTTCTACGGTGAACTGGTTGACCTGGGCGTGAAAGAGAAGCTGATTGAAAAAGCGGGCGCCTGGTACAGCT
ACAACGGTGACAAGATTGGTCAGGGTAAAGCGAATGCTATCTCCTGGCTGAAAGAGAACCCGGCTGCGGCGAAAGAGATT
GAGAAGAAGGTGCGCGAGCTTCTGCTGAACAACCAGGACTCCAAACCTGATTTCGTAGTCGATGCTGCGGATGCTGAAGA
AACCAACGAAGACTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F0QVB9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

85.196

94.034

0.801
  recA Vibrio cholerae O1 biovar El Tor strain E7946

85.196

94.034

0.801
  recA Pseudomonas stutzeri DSM 10701

72.832

98.295

0.716
  recA Acinetobacter baumannii D1279779

70.774

99.148

0.702
  recA Acinetobacter baylyi ADP1

74.39

93.182

0.693
  recA Glaesserella parasuis strain SC1401

69.075

98.295

0.679
  recA Neisseria gonorrhoeae MS11

69.632

92.614

0.645
  recA Neisseria gonorrhoeae MS11

69.632

92.614

0.645
  recA Neisseria gonorrhoeae strain FA1090

69.632

92.614

0.645
  recA Ralstonia pseudosolanacearum GMI1000

70.74

88.352

0.625
  recA Helicobacter pylori strain NCTC11637

61.721

95.739

0.591
  recA Helicobacter pylori 26695

61.424

95.739

0.588
  recA Streptococcus pneumoniae TIGR4

62.848

91.761

0.577
  recA Streptococcus pneumoniae Rx1

62.848

91.761

0.577
  recA Streptococcus pneumoniae D39

62.848

91.761

0.577
  recA Streptococcus pneumoniae R6

62.848

91.761

0.577
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

91.193

0.571
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.037

92.045

0.571
  recA Streptococcus mitis NCTC 12261

62.229

91.761

0.571
  recA Streptococcus mitis SK321

62.229

91.761

0.571
  recA Streptococcus pyogenes NZ131

61.846

92.33

0.571
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.36

94.602

0.571
  recA Lactococcus lactis subsp. cremoris KW2

61.92

91.761

0.568
  recA Streptococcus mutans UA159

61.538

92.33

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

60.923

92.33

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

91.193

0.557