Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   L0P89_RS07190 Genome accession   NZ_CP091037
Coordinates   1609131..1610132 (+) Length   333 a.a.
NCBI ID   WP_235267729.1    Uniprot ID   -
Organism   Allomuricauda sp. SCSIO 65647     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1604131..1615132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0P89_RS07175 (L0P89_07175) - 1606065..1606550 (-) 486 WP_235267726.1 gliding motility lipoprotein GldH -
  L0P89_RS07180 (L0P89_07180) - 1606543..1607703 (-) 1161 WP_235267727.1 stage 0 sporulation family protein -
  L0P89_RS07185 (L0P89_07185) - 1607806..1608837 (-) 1032 WP_235267728.1 rhodanese-related sulfurtransferase -
  L0P89_RS07190 (L0P89_07190) recA 1609131..1610132 (+) 1002 WP_235267729.1 recombinase RecA Machinery gene
  L0P89_RS07195 (L0P89_07195) - 1610212..1610652 (+) 441 WP_235267730.1 hypothetical protein -
  L0P89_RS07200 (L0P89_07200) - 1610677..1611210 (+) 534 WP_235267731.1 RNA polymerase sigma factor -
  L0P89_RS07205 (L0P89_07205) - 1611223..1612695 (+) 1473 WP_235267732.1 outer membrane beta-barrel protein -
  L0P89_RS07210 (L0P89_07210) - 1612782..1613531 (-) 750 WP_235268002.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  L0P89_RS07215 (L0P89_07215) trpS 1613605..1614573 (+) 969 WP_235267733.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35941.28 Da        Isoelectric Point: 6.3684

>NTDB_id=647297 L0P89_RS07190 WP_235267729.1 1609131..1610132(+) (recA) [Allomuricauda sp. SCSIO 65647]
MSSEKEAKLKALKLTLDKLDKTYGKGAVMKMGDHVVEDVEVIPSGSLGLDIALGVGGYPRGRVIEIYGPESSGKTTLTLH
AIAEAQKNGGIAAFIDAEHAFDRFYAKKLGIDIDNLIISQPDHGEQALEIADNLIRSGAIDIVIVDSVAALTPKSEIEGE
MGDSKMGLHARLMSQALRKLTSTISKTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKDTDGNV
QGNKTRVKVVKNKVAPPFKTAEFDIMYGDGISKVGEILDLGVAYEIVKKSGSWFSYGDTKLGQGRDAVKALLLDNPELSE
ELEAKIKEAIASI

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=647297 L0P89_RS07190 WP_235267729.1 1609131..1610132(+) (recA) [Allomuricauda sp. SCSIO 65647]
ATGAGCAGCGAAAAAGAAGCAAAGCTAAAGGCCCTTAAACTGACATTGGACAAGTTGGACAAAACCTATGGAAAAGGCGC
CGTCATGAAAATGGGCGACCATGTGGTTGAAGATGTAGAGGTAATTCCATCTGGATCGTTGGGTCTTGATATTGCCCTGG
GGGTCGGAGGATACCCGCGTGGACGCGTGATTGAAATCTATGGCCCCGAATCATCGGGCAAAACCACCTTGACCCTTCAT
GCCATTGCCGAGGCCCAAAAAAATGGAGGCATTGCCGCTTTTATCGATGCCGAACATGCTTTTGATCGTTTCTATGCCAA
AAAATTGGGTATTGATATCGACAACCTGATCATATCGCAACCTGACCATGGTGAGCAAGCCCTAGAAATTGCCGACAACT
TGATACGCTCTGGAGCCATTGATATTGTCATCGTCGATTCAGTGGCAGCCCTTACACCGAAAAGTGAAATAGAAGGCGAG
ATGGGCGATTCGAAAATGGGCCTGCATGCCAGACTTATGTCACAAGCCCTCAGAAAACTTACTTCGACCATCAGCAAGAC
GAACTGTACCGTAATCTTCATCAACCAGCTTCGTGAGAAAATCGGGGTAATGTTCGGCAATCCTGAGACAACCACTGGGG
GAAATGCGCTGAAATTCTATGCCTCGGTGCGATTGGATATTCGTCGATCGACCCAAATAAAAGACACCGATGGCAATGTT
CAGGGCAATAAAACCCGTGTGAAGGTCGTCAAGAACAAAGTGGCCCCTCCCTTTAAAACCGCTGAATTCGACATCATGTA
TGGTGACGGTATCTCAAAGGTCGGCGAAATATTGGATCTTGGTGTGGCCTATGAGATTGTCAAAAAAAGTGGCTCATGGT
TCAGTTATGGCGACACCAAATTAGGTCAAGGCCGTGATGCCGTTAAAGCCCTCCTCTTGGATAATCCAGAATTATCAGAA
GAACTGGAGGCAAAAATAAAAGAGGCCATCGCTTCGATATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

76.488

100

0.772
  recA Ralstonia pseudosolanacearum GMI1000

67.742

93.093

0.631
  recA Helicobacter pylori strain NCTC11637

63.72

98.498

0.628
  recA Helicobacter pylori 26695

63.72

98.498

0.628
  recA Glaesserella parasuis strain SC1401

63.526

98.799

0.628
  recA Acinetobacter baylyi ADP1

64.706

96.997

0.628
  recA Acinetobacter baumannii D1279779

64

97.598

0.625
  recA Neisseria gonorrhoeae strain FA1090

66.559

93.393

0.622
  recA Neisseria gonorrhoeae MS11

66.559

93.393

0.622
  recA Neisseria gonorrhoeae MS11

66.559

93.393

0.622
  recA Pseudomonas stutzeri DSM 10701

63.354

96.697

0.613
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.654

97.297

0.61
  recA Bacillus subtilis subsp. subtilis str. 168

63.836

95.495

0.61
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.154

97.598

0.607
  recA Vibrio cholerae strain A1552

62.154

97.598

0.607
  recA Streptococcus mitis NCTC 12261

62.422

96.697

0.604
  recA Streptococcus mitis SK321

62.422

96.697

0.604
  recA Latilactobacillus sakei subsp. sakei 23K

60.736

97.898

0.595
  recA Streptococcus pneumoniae Rx1

61.18

96.697

0.592
  recA Streptococcus pneumoniae D39

61.18

96.697

0.592
  recA Streptococcus pneumoniae R6

61.18

96.697

0.592
  recA Streptococcus pneumoniae TIGR4

61.18

96.697

0.592
  recA Streptococcus pyogenes NZ131

60.802

97.297

0.592
  recA Streptococcus mutans UA159

59.938

96.697

0.58
  recA Lactococcus lactis subsp. cremoris KW2

59.752

96.997

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.698

96.396

0.547