Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OHQ36_RS20595 Genome accession   NZ_CP107860
Coordinates   4569979..4570977 (-) Length   332 a.a.
NCBI ID   WP_330305191.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00500     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4564979..4575977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHQ36_RS20575 (OHQ36_20575) - 4565063..4565824 (-) 762 WP_327429406.1 DeoR/GlpR family DNA-binding transcription regulator -
  OHQ36_RS20580 (OHQ36_20580) - 4566008..4567546 (-) 1539 WP_330305188.1 MFS transporter -
  OHQ36_RS20585 (OHQ36_20585) - 4567609..4568631 (+) 1023 WP_330305189.1 YafY family protein -
  OHQ36_RS20590 (OHQ36_20590) - 4568639..4569268 (-) 630 WP_330305190.1 TetR family transcriptional regulator -
  OHQ36_RS20595 (OHQ36_20595) rpoS 4569979..4570977 (-) 999 WP_330305191.1 sigma-70 family RNA polymerase sigma factor Regulator
  OHQ36_RS20600 (OHQ36_20600) - 4571152..4571688 (+) 537 WP_330305192.1 N-acetyltransferase family protein -
  OHQ36_RS20605 (OHQ36_20605) - 4571712..4572518 (-) 807 WP_406501729.1 dioxygenase -
  OHQ36_RS20610 (OHQ36_20610) - 4572660..4573163 (+) 504 WP_330305194.1 MarR family transcriptional regulator -
  OHQ36_RS20615 (OHQ36_20615) - 4573385..4574929 (-) 1545 WP_330305195.1 MFS transporter -
  OHQ36_RS20620 (OHQ36_20620) - 4575073..4575717 (-) 645 WP_330305196.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37122.88 Da        Isoelectric Point: 5.0475

>NTDB_id=647073 OHQ36_RS20595 WP_330305191.1 4569979..4570977(-) (rpoS) [Streptomyces sp. NBC_00500]
MATRAVARRKSATGETSDAARSVRVVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVFARQILDGEATAGAD
ASREELEALVAEGERAKDIFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNRKNGREPEHAEIAAELDSTPERVTDVLDWARDPVSLNMAVDDDGDTQF
GDLLEDTSAVSPEQSVMTLLRSEELDDLIGRLDQRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLARDTGFDAAA

Nucleotide


Download         Length: 999 bp        

>NTDB_id=647073 OHQ36_RS20595 WP_330305191.1 4569979..4570977(-) (rpoS) [Streptomyces sp. NBC_00500]
ATGGCAACCCGTGCCGTCGCCCGTCGTAAGTCCGCCACCGGCGAGACCAGCGACGCGGCACGCAGTGTTCGCGTCGTAGG
CGGCGAGATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGTACGCCACTGCTCGACGCCGCCAAGG
AAGTCGAGCTGTCCCAGACCATCGAGGCGGGTGTGTTCGCGCGGCAGATCCTCGACGGCGAGGCTACGGCCGGAGCGGAC
GCGTCCCGCGAGGAGCTCGAGGCGCTGGTCGCCGAGGGCGAGCGAGCGAAGGACATCTTCATCCGCTCGAACCTCCGGCT
GGTCGTCGCTGTCGCCCGGCGCTATCCGCGCAGCGGCCTGCCCCTGCTCGACCTGATCCAGGAGGGCAACGCGGGTCTGG
TGCGCGCCGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGTCAGGCCATC
ACCCGTTCCATCGCCGACCAGTCGCGCACGATCCGCCTCCCCGTCCACCTGGTCGAGGAACTGGGCCGGATCCGGCGCGT
ACAGCGCGAGTTCAACCGCAAGAACGGGCGCGAGCCCGAGCACGCGGAGATCGCCGCCGAACTCGACTCGACGCCGGAGC
GCGTGACGGACGTCCTGGACTGGGCCCGCGACCCGGTCTCGCTGAACATGGCGGTGGACGACGACGGTGACACCCAGTTC
GGCGACCTGCTGGAGGACACCTCCGCGGTCTCCCCCGAGCAGTCGGTCATGACCCTGCTGCGCAGCGAGGAACTGGACGA
CCTGATCGGCCGCCTCGACCAGCGCACGGCCTCCATCATCAAGATGCGGTACGGCATCGATGACGGCCGGGAGCGCACGC
TCACCGAGGTCGGCAAGGAGCACGGCCTCACGCGCGAGCGCATCCGCCAGATCGAGAAGCACGCGCTTCTCGAACTGAAG
AAGCTGGCCCGTGACACCGGGTTCGACGCGGCGGCGTGA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)

Sigma-70, region 4 (Sigma70_r4)

(269-321)

Sigma-70 region 2 (Sigma70_r2)

(100-169)

Sigma-70 region 3 (Sigma70_r3)

(179-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.468

90.06

0.364