Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   L0B52_RS04530 Genome accession   NZ_CP090975
Coordinates   984755..985792 (-) Length   345 a.a.
NCBI ID   WP_235065438.1    Uniprot ID   -
Organism   Suttonella sp. R2A3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 979755..990792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0B52_RS04510 (L0B52_04510) csrA 980181..980357 (-) 177 WP_235065391.1 carbon storage regulator CsrA -
  L0B52_RS04515 (L0B52_04515) - 980457..981698 (-) 1242 WP_235065393.1 aspartate kinase -
  L0B52_RS04520 (L0B52_04520) alaS 981702..984332 (-) 2631 WP_235065394.1 alanine--tRNA ligase -
  L0B52_RS04525 (L0B52_04525) - 984322..984762 (-) 441 WP_235065399.1 regulatory protein RecX -
  L0B52_RS04530 (L0B52_04530) recA 984755..985792 (-) 1038 WP_235065438.1 recombinase RecA Machinery gene
  L0B52_RS04535 (L0B52_04535) - 986034..987074 (+) 1041 WP_235065400.1 hydroxymethylglutaryl-CoA reductase -
  L0B52_RS04540 (L0B52_04540) fni 987071..988102 (+) 1032 WP_235065401.1 type 2 isopentenyl-diphosphate Delta-isomerase -
  L0B52_RS04545 (L0B52_04545) - 988099..989256 (+) 1158 WP_235065402.1 hydroxymethylglutaryl-CoA synthase -
  L0B52_RS04550 (L0B52_04550) - 989260..990318 (+) 1059 WP_235065403.1 mevalonate kinase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37164.32 Da        Isoelectric Point: 5.1283

>NTDB_id=646832 L0B52_RS04530 WP_235065438.1 984755..985792(-) (recA) [Suttonella sp. R2A3]
MNDDQKKALDAVLKQLDKQYGKGTVMRLGDQPAQTNIPAVSTGSLGLDIALGIGGLPLGRIVEIYGPESSGKTTLTLQVI
AEAQKQGGTAAFIDAEHALDPIYAKKLGVDTENLYITQPDTGEQALEITDALVRSGAFSVIVVDSVAALTPKAEIEGEMG
DSHMGLQARLMSQALRKLTANIKRANTLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRMDIRRIGAVKDGDEILGN
QTRVKVVKNKVSPPFKQAEFEILYGEGISRSGEIIQLGVDHGLIDKSGAWYSYQGDKIGQGKEKVRAFLNEHPDVANNIE
AQLREKLIGSDQVSDLPETTPLSDD

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=646832 L0B52_RS04530 WP_235065438.1 984755..985792(-) (recA) [Suttonella sp. R2A3]
ATGAACGACGACCAGAAAAAAGCGCTTGATGCGGTGCTTAAGCAGCTTGATAAGCAATATGGCAAAGGCACGGTGATGCG
TTTGGGTGACCAGCCGGCGCAAACCAATATTCCAGCAGTTTCGACTGGCTCGCTGGGTTTGGATATTGCTTTGGGGATTG
GTGGGTTGCCGTTAGGGCGCATTGTCGAGATCTACGGCCCAGAATCTTCGGGTAAAACTACGCTTACCCTACAAGTGATC
GCTGAAGCGCAAAAACAAGGCGGAACCGCAGCGTTTATTGACGCCGAGCACGCGCTTGATCCGATTTATGCGAAAAAGCT
TGGCGTGGATACTGAAAACCTCTATATCACTCAGCCCGATACTGGTGAGCAAGCGTTGGAGATTACCGATGCTTTGGTGC
GCTCTGGCGCGTTTTCTGTGATTGTCGTTGACTCGGTTGCCGCGCTGACCCCGAAAGCGGAAATTGAAGGGGAAATGGGT
GATTCGCACATGGGCCTGCAAGCGCGCTTGATGAGCCAGGCGTTGCGTAAGTTGACCGCTAATATTAAACGCGCCAATAC
TTTGGTGATTTTCATTAACCAAATCCGGATGAAAATTGGCGTGATGTTTGGTTCACCTGAAACGACTACCGGTGGTAATG
CCTTAAAATTCTATTCTTCAGTGCGTATGGATATTCGTCGCATTGGTGCGGTTAAAGATGGCGATGAGATATTAGGTAAC
CAGACGCGAGTTAAAGTGGTGAAAAATAAAGTGTCACCACCATTTAAACAGGCAGAATTTGAGATCCTCTATGGCGAAGG
CATTTCGCGCAGTGGCGAGATTATTCAGCTTGGCGTCGATCATGGCTTGATTGATAAATCAGGCGCTTGGTATAGCTACC
AAGGTGATAAAATTGGTCAAGGTAAAGAAAAGGTTCGCGCGTTTTTAAACGAACATCCTGATGTCGCCAATAATATCGAG
GCGCAATTGCGCGAAAAACTGATTGGCTCAGATCAGGTGAGCGACCTACCGGAAACCACGCCACTTAGCGATGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

70.725

100

0.707
  recA Acinetobacter baylyi ADP1

70.674

98.841

0.699
  recA Acinetobacter baumannii D1279779

69.096

99.42

0.687
  recA Glaesserella parasuis strain SC1401

68.805

99.42

0.684
  recA Vibrio cholerae strain A1552

66.087

100

0.661
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.087

100

0.661
  recA Neisseria gonorrhoeae MS11

69.136

93.913

0.649
  recA Neisseria gonorrhoeae MS11

69.136

93.913

0.649
  recA Neisseria gonorrhoeae strain FA1090

69.136

93.913

0.649
  recA Ralstonia pseudosolanacearum GMI1000

71.154

90.435

0.643
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.465

95.942

0.638
  recA Helicobacter pylori strain NCTC11637

61.449

100

0.614
  recA Helicobacter pylori 26695

60.87

100

0.609
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.024

95.072

0.609
  recA Bacillus subtilis subsp. subtilis str. 168

63.665

93.333

0.594
  recA Latilactobacillus sakei subsp. sakei 23K

58.43

99.71

0.583
  recA Streptococcus mutans UA159

59.509

94.493

0.562
  recA Streptococcus pneumoniae Rx1

57.396

97.971

0.562
  recA Streptococcus pneumoniae D39

57.396

97.971

0.562
  recA Streptococcus pneumoniae R6

57.396

97.971

0.562
  recA Streptococcus pneumoniae TIGR4

57.396

97.971

0.562
  recA Streptococcus pyogenes NZ131

58.006

95.942

0.557
  recA Streptococcus mitis SK321

57.538

94.203

0.542
  recA Streptococcus mitis NCTC 12261

57.231

94.203

0.539
  recA Lactococcus lactis subsp. cremoris KW2

56.923

94.203

0.536
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.402

95.072

0.536