Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   L1P01_RS05675 Genome accession   NZ_CP090973
Coordinates   1322270..1323307 (+) Length   345 a.a.
NCBI ID   WP_012915690.1    Uniprot ID   D2UDM9
Organism   Xanthomonas albilineans strain Xa04     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1317270..1328307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1P01_RS05650 miaA 1317633..1318583 (+) 951 WP_012915685.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  L1P01_RS05655 hfq 1318704..1318979 (+) 276 WP_012915686.1 RNA chaperone Hfq -
  L1P01_RS05660 hflX 1319006..1320331 (+) 1326 WP_012915687.1 ribosome rescue GTPase HflX -
  L1P01_RS05665 - 1320512..1321006 (+) 495 WP_012915688.1 CinA family protein -
  L1P01_RS05670 lexA 1321442..1322077 (+) 636 WP_012915689.1 transcriptional repressor LexA -
  L1P01_RS05675 recA 1322270..1323307 (+) 1038 WP_012915690.1 recombinase RecA Machinery gene
  L1P01_RS05680 recX 1323421..1323912 (+) 492 WP_012915691.1 recombination regulator RecX -
  L1P01_RS05685 alaS 1324018..1326669 (+) 2652 WP_012915692.1 alanine--tRNA ligase -
  L1P01_RS05690 csrA 1326799..1327014 (+) 216 WP_012915693.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37072.68 Da        Isoelectric Point: 5.1833

>NTDB_id=646799 L1P01_RS05675 WP_012915690.1 1322270..1323307(+) (recA) [Xanthomonas albilineans strain Xa04]
MDENKKRALAAALSQIEKQFGKGSVMRMGDRVIEAVEVIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
QCQKNGGTAAFIDAEHALDPVYAAKLGVNVDELLLSQPDTGEQALEIADMLVRSGSVDIVVIDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVEKAGAWYSYGSERIGQGKDNARGYLRDNPQVAAKL
ESELREKFQPTEIAPSPADAEDLEA

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=646799 L1P01_RS05675 WP_012915690.1 1322270..1323307(+) (recA) [Xanthomonas albilineans strain Xa04]
ATGGACGAGAACAAGAAGCGCGCGCTCGCGGCCGCCCTGAGTCAGATCGAAAAGCAGTTCGGCAAGGGCTCGGTGATGCG
GATGGGCGATCGTGTCATCGAAGCCGTGGAAGTGATTCCGACCGGTTCGCTGATGCTGGATATCGCGCTCGGCATCGGTG
GCCTGCCGAAGGGCCGCGTGGTCGAGATTTACGGTCCGGAATCCTCGGGCAAGACCACCCTGACCCTGCAGGCCATCGCT
CAGTGTCAGAAGAACGGCGGCACCGCTGCGTTCATTGATGCCGAACATGCACTGGACCCGGTCTACGCTGCCAAGCTGGG
CGTCAATGTCGACGAATTGCTGCTGTCGCAGCCGGATACCGGCGAACAAGCGCTGGAAATCGCCGATATGCTGGTGCGCT
CGGGGTCGGTGGACATCGTGGTGATTGACTCGGTCGCCGCGTTGACCCCAAAGGCCGAAATCGAGGGTGAAATGGGCGAT
CAACTGCCCGGCCTGCAGGCGCGTCTGATGAGCCAGGCGCTGCGTAAGCTCACCGGCAACATCAAGCGCTCCAACACCCT
GGTCGTCTTCATCAACCAGTTGCGCATGAAGATCGGTGTGATGATGCCGGGGCAGAGCCCGGAAACCACCACCGGCGGTA
ACGCACTGAAGTTTTACGCATCGGTGCGGTTGGATATCCGCCGCATCGGCGCGATCAAGAAGGGCGATGAAATCATCGGC
AACCAGACCAAAATCAAGGTGGTCAAGAACAAGTTGGCTCCCCCGTTCAAACAGGTCGTCACCGAGATCCTCTACGGCGA
AGGCATCAGTCGCGAGGGCGAACTGATCGACATGGGCGTGGAGGCCAAGCTGGTTGAAAAGGCCGGTGCCTGGTATAGCT
ACGGCAGCGAGCGCATCGGCCAGGGCAAGGACAACGCGCGCGGCTACCTGCGCGACAACCCTCAGGTTGCCGCCAAGTTG
GAAAGCGAACTGCGCGAGAAGTTCCAGCCCACGGAAATCGCGCCCAGCCCAGCCGATGCCGAAGACCTCGAGGCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D2UDM9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

69.54

100

0.701
  recA Vibrio cholerae strain A1552

69.253

100

0.699
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.253

100

0.699
  recA Acinetobacter baylyi ADP1

72.561

95.072

0.69
  recA Acinetobacter baumannii D1279779

71.903

95.942

0.69
  recA Ralstonia pseudosolanacearum GMI1000

75.316

91.594

0.69
  recA Neisseria gonorrhoeae MS11

69.939

94.493

0.661
  recA Neisseria gonorrhoeae MS11

69.939

94.493

0.661
  recA Neisseria gonorrhoeae strain FA1090

69.939

94.493

0.661
  recA Glaesserella parasuis strain SC1401

67.059

98.551

0.661
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.174

96.812

0.612
  recA Latilactobacillus sakei subsp. sakei 23K

60.704

98.841

0.6
  recA Streptococcus mitis NCTC 12261

60.234

99.13

0.597
  recA Helicobacter pylori strain NCTC11637

60.651

97.971

0.594
  recA Bacillus subtilis subsp. subtilis str. 168

63.077

94.203

0.594
  recA Helicobacter pylori 26695

60.355

97.971

0.591
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.438

92.754

0.588
  recA Streptococcus mitis SK321

61.89

95.072

0.588
  recA Streptococcus pyogenes NZ131

61.212

95.652

0.586
  recA Streptococcus pneumoniae D39

61.585

95.072

0.586
  recA Streptococcus pneumoniae Rx1

61.585

95.072

0.586
  recA Streptococcus pneumoniae R6

61.585

95.072

0.586
  recA Streptococcus pneumoniae TIGR4

61.585

95.072

0.586
  recA Streptococcus mutans UA159

60.909

95.652

0.583
  recA Lactococcus lactis subsp. cremoris KW2

60.308

94.203

0.568
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.509

94.493

0.562