Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   L1K66_RS11850 Genome accession   NZ_CP090949
Coordinates   2477470..2478525 (-) Length   351 a.a.
NCBI ID   WP_252258063.1    Uniprot ID   -
Organism   Erythrobacter aurantius strain C5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2472470..2483525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1K66_RS11840 - 2472758..2474509 (+) 1752 WP_252258061.1 cation:proton antiporter -
  L1K66_RS11845 alaS 2474544..2477210 (-) 2667 WP_252258062.1 alanine--tRNA ligase -
  L1K66_RS11850 recA 2477470..2478525 (-) 1056 WP_252258063.1 recombinase RecA Machinery gene
  L1K66_RS11855 - 2478683..2481094 (-) 2412 WP_252260504.1 response regulator -
  L1K66_RS11860 - 2481224..2481757 (-) 534 WP_034954866.1 DUF2062 domain-containing protein -
  L1K66_RS11865 smpB 2481983..2482465 (-) 483 WP_034954389.1 SsrA-binding protein SmpB -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37721.28 Da        Isoelectric Point: 5.3532

>NTDB_id=646607 L1K66_RS11850 WP_252258063.1 2477470..2478525(-) (recA) [Erythrobacter aurantius strain C5]
MATQLKLVEKEKDVDRQKALDAALAQIDRAFGKGSAMKLGQKEAMQVGAISTGSLGLDIALGVGGLPKGRVIEVYGPESS
GKTTLALHVIAEAQKAGGTAAFVDAEHALDPVYAKKLGVDIDELIVSQPDTGEQALEITDTLVRSNAVDVLVVDSVAALV
PRAEIEGEMGDSHVGLQARLMSQSLRKLTGSINRSKCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQ
IKDRDEIIGNTTRVKVVKNKVAPPFKQVEFDIMYGEGISKIGEILDLGVKAGVVEKSGSWYSYDSIRIGQGRENAKVYLK
ENPEVCDKLEAAIRGKTDEVAEEMMTGPDAD

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=646607 L1K66_RS11850 WP_252258063.1 2477470..2478525(-) (recA) [Erythrobacter aurantius strain C5]
ATGGCTACGCAACTTAAGCTGGTAGAAAAGGAAAAAGACGTGGACCGTCAAAAGGCGCTCGACGCTGCGCTTGCACAGAT
TGATCGGGCTTTCGGCAAGGGTTCGGCGATGAAGCTGGGCCAGAAGGAAGCGATGCAGGTCGGAGCGATTTCGACCGGGT
CGCTGGGCCTCGATATCGCGCTCGGTGTGGGAGGCCTGCCCAAAGGCCGCGTAATCGAAGTCTATGGCCCGGAAAGCTCG
GGCAAGACGACGCTGGCGCTGCATGTCATTGCCGAAGCTCAGAAGGCGGGCGGCACAGCCGCGTTCGTCGATGCCGAACA
CGCTCTGGATCCCGTCTATGCCAAGAAGCTGGGCGTGGACATTGACGAGCTGATCGTCTCGCAGCCCGATACGGGTGAGC
AGGCGCTCGAAATTACCGACACGCTGGTCCGCTCGAACGCGGTAGACGTGTTGGTGGTCGATTCGGTCGCGGCGCTTGTT
CCCCGCGCCGAAATCGAGGGCGAGATGGGCGATTCCCATGTCGGCCTCCAGGCGCGGCTCATGTCCCAATCGCTGCGCAA
GCTGACCGGATCGATCAACCGTTCGAAGTGCATGGTGATCTTCATCAATCAGCTGCGCATGAAAATCGGCGTGATGTACG
GCAACCCGGAAACCACCACTGGTGGCAACGCGCTCAAGTTCTACGCCTCGGTGCGTCTCGACATCCGGCGCACGGGCCAG
ATCAAGGATCGCGACGAAATCATCGGCAACACCACTCGCGTCAAGGTGGTCAAGAACAAGGTGGCGCCGCCGTTCAAGCA
GGTCGAATTCGACATCATGTACGGCGAAGGCATTTCGAAGATCGGCGAAATCCTCGATCTCGGAGTGAAGGCCGGTGTGG
TCGAGAAATCGGGCAGCTGGTATTCCTACGACAGCATCCGGATTGGCCAAGGCCGCGAAAACGCCAAGGTCTACCTCAAG
GAAAACCCTGAAGTTTGCGACAAGTTGGAAGCCGCCATTCGCGGTAAAACCGACGAGGTCGCCGAGGAGATGATGACCGG
TCCGGACGCGGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

69.277

94.587

0.655
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.953

96.011

0.652
  recA Vibrio cholerae strain A1552

67.953

96.011

0.652
  recA Pseudomonas stutzeri DSM 10701

70.679

92.308

0.652
  recA Neisseria gonorrhoeae strain FA1090

69.159

91.453

0.632
  recA Neisseria gonorrhoeae MS11

69.159

91.453

0.632
  recA Neisseria gonorrhoeae MS11

69.159

91.453

0.632
  recA Bacillus subtilis subsp. subtilis str. 168

68.75

91.168

0.627
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.768

93.447

0.624
  recA Acinetobacter baylyi ADP1

68.012

91.738

0.624
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.118

96.866

0.621
  recA Acinetobacter baumannii D1279779

67.081

91.738

0.615
  recA Ralstonia pseudosolanacearum GMI1000

70.13

87.749

0.615
  recA Latilactobacillus sakei subsp. sakei 23K

63.609

96.296

0.613
  recA Helicobacter pylori strain NCTC11637

63.314

96.296

0.61
  recA Helicobacter pylori 26695

63.018

96.296

0.607
  recA Streptococcus pneumoniae D39

62.018

96.011

0.595
  recA Streptococcus pneumoniae Rx1

62.018

96.011

0.595
  recA Streptococcus pneumoniae R6

62.018

96.011

0.595
  recA Streptococcus pneumoniae TIGR4

62.018

96.011

0.595
  recA Streptococcus pyogenes NZ131

60.933

97.721

0.595
  recA Streptococcus mitis SK321

61.791

95.442

0.59
  recA Streptococcus mitis NCTC 12261

61.791

95.442

0.59
  recA Streptococcus mutans UA159

60.117

97.151

0.584
  recA Lactococcus lactis subsp. cremoris KW2

59.357

97.436

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.538

92.593

0.57