Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LY254_RS06280 Genome accession   NZ_CP090898
Coordinates   1170998..1172110 (+) Length   370 a.a.
NCBI ID   WP_247479634.1    Uniprot ID   -
Organism   Synechococcus sp. NB0720_010     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1165998..1177110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LY254_RS06255 (LY254_06255) - 1166708..1167175 (+) 468 WP_247479628.1 NAD(P)H-quinone oxidoreductase subunit N -
  LY254_RS06260 (LY254_06260) - 1167136..1168188 (+) 1053 WP_247479629.1 LdpA C-terminal domain-containing domain -
  LY254_RS06265 (LY254_06265) - 1168205..1169875 (+) 1671 WP_247479631.1 AAA family ATPase -
  LY254_RS06275 (LY254_06275) - 1170097..1170846 (+) 750 WP_247479633.1 HAD family hydrolase -
  LY254_RS06280 (LY254_06280) recA 1170998..1172110 (+) 1113 WP_247479634.1 recombinase RecA Machinery gene
  LY254_RS06285 (LY254_06285) - 1172176..1172517 (-) 342 WP_247479636.1 DUF1815 family protein -
  LY254_RS06290 (LY254_06290) - 1172597..1172839 (-) 243 WP_247479638.1 DUF2839 domain-containing protein -
  LY254_RS06295 (LY254_06295) - 1172886..1174322 (-) 1437 WP_247479641.1 helicase -
  LY254_RS06300 (LY254_06300) - 1174364..1175218 (+) 855 WP_247479643.1 prephenate/arogenate dehydrogenase -
  LY254_RS06305 (LY254_06305) crtD 1175215..1176717 (-) 1503 WP_247479645.1 C-3',4' desaturase CrtD -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39381.86 Da        Isoelectric Point: 6.7385

>NTDB_id=646219 LY254_RS06280 WP_247479634.1 1170998..1172110(+) (recA) [Synechococcus sp. NB0720_010]
MPADDKSTSAKSPERDKALGLVLNQIERNFGKGSIMRLGDASRMRIETTPTGALTLDLALGGGYPKGRVVEVYGPESSGK
TTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAAALGVDIENLLVSQPDTGEMALEIVDQLVRSAAVDIVVVDSVAALTPR
SEIEGEMGDLAVGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRQKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLK
RGTEEFGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTVGCLLDLAEEHGVVVRKGAWYSYEGDNIGQGRDNTITWLEQN
STEKEAIEVKVRQKLSETTDSLKPVATAAAKLAAAGSASADKDQALPAAS

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=646219 LY254_RS06280 WP_247479634.1 1170998..1172110(+) (recA) [Synechococcus sp. NB0720_010]
ATGCCTGCTGACGACAAGAGCACCAGCGCCAAAAGTCCTGAGCGGGACAAGGCCCTTGGCCTCGTTCTGAACCAAATCGA
GCGCAACTTCGGCAAGGGCTCGATCATGCGCCTGGGGGATGCCTCCCGCATGCGGATCGAGACCACCCCCACCGGCGCCC
TGACCCTCGACCTCGCCCTCGGCGGTGGCTACCCGAAGGGACGGGTTGTTGAGGTCTATGGCCCGGAGAGCTCGGGTAAG
ACGACCCTCACCCTGCACGCCATCGCTGAAGTGCAGCGCCGCGGAGGCGTAGCCGCCTTCGTCGACGCCGAGCACGCCCT
GGACCCCGTCTATGCCGCGGCCCTGGGCGTCGACATCGAGAACCTGCTGGTCTCCCAGCCGGACACCGGCGAGATGGCCC
TGGAGATCGTTGATCAACTGGTGCGCTCCGCAGCCGTCGACATCGTCGTGGTGGACTCGGTGGCAGCGCTGACGCCCCGC
TCGGAAATCGAGGGCGAGATGGGGGACCTCGCCGTCGGCAGCCAGGCCCGCCTGATGAGCCAGGCGATGCGCAAAATCAC
CGGCAACATCGGCAAGTCCGGTTGCACCGTGATCTTCCTGAACCAGCTCCGCCAAAAGATTGGCGTGACCTACGGCAACC
CCGAGACCACCACCGGCGGTAACGCCCTGAAGTTCTACGCCTCAGTCCGCCTCGACATCCGCCGCATCCAGACCCTCAAG
CGGGGCACCGAAGAATTCGGGATCCGCGCCAAGGTGAAAGTGGCCAAAAACAAAGTGGCCCCGCCCTTCCGGATCGCGGA
ATTCGACATCCTCTTCGGCCGTGGAATTAGCACCGTGGGCTGCCTGCTCGATCTCGCCGAAGAGCACGGTGTCGTTGTTC
GCAAAGGTGCTTGGTACAGCTACGAAGGCGACAACATCGGCCAAGGGCGCGATAACACCATCACCTGGCTCGAGCAGAAC
AGCACCGAGAAAGAGGCCATTGAAGTGAAGGTGCGTCAAAAACTCAGCGAAACCACCGACTCGCTGAAGCCCGTCGCCAC
CGCCGCTGCCAAGTTGGCCGCCGCCGGAAGCGCCAGCGCCGACAAGGACCAGGCCCTACCCGCCGCCAGCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(17-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

62.09

90.541

0.562
  recA Ralstonia pseudosolanacearum GMI1000

61.905

90.811

0.562
  recA Acinetobacter baylyi ADP1

63.975

87.027

0.557
  recA Acinetobacter baumannii D1279779

63.077

87.838

0.554
  recA Glaesserella parasuis strain SC1401

60.059

91.351

0.549
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

86.757

0.538
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.18

87.027

0.532
  recA Vibrio cholerae strain A1552

61.18

87.027

0.532
  recA Neisseria gonorrhoeae MS11

60.681

87.297

0.53
  recA Neisseria gonorrhoeae MS11

60.681

87.297

0.53
  recA Neisseria gonorrhoeae strain FA1090

60.681

87.297

0.53
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.507

90.541

0.53
  recA Helicobacter pylori strain NCTC11637

59.259

87.568

0.519
  recA Helicobacter pylori 26695

59.259

87.568

0.519
  recA Latilactobacillus sakei subsp. sakei 23K

59.062

86.486

0.511
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.438

82.703

0.508
  recA Lactococcus lactis subsp. cremoris KW2

55.856

90

0.503
  recA Streptococcus pyogenes NZ131

54.094

92.432

0.5
  recA Streptococcus mutans UA159

56.923

87.838

0.5
  recA Streptococcus pneumoniae D39

55.963

88.378

0.495
  recA Streptococcus pneumoniae Rx1

55.963

88.378

0.495
  recA Streptococcus pneumoniae R6

55.963

88.378

0.495
  recA Streptococcus pneumoniae TIGR4

55.963

88.378

0.495
  recA Streptococcus mitis SK321

56.481

87.568

0.495
  recA Streptococcus mitis NCTC 12261

56.481

87.568

0.495
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.381

89.459

0.486