Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LL229_RS02505 Genome accession   NZ_CP090823
Coordinates   438294..439457 (+) Length   387 a.a.
NCBI ID   WP_003131629.1    Uniprot ID   A0A2X0R6X4
Organism   Lactococcus lactis subsp. lactis strain 229     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 434055..440542 438294..439457 within 0


Gene organization within MGE regions


Location: 434055..440542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL229_RS02490 (LL229_0452) era 434528..435439 (+) 912 WP_003131632.1 GTPase Era -
  LL229_RS02495 (LL229_0453) asnB 435536..437128 (+) 1593 WP_010905297.1 asparagine synthase B -
  LL229_RS02500 (LL229_0454) mutM 437322..438140 (+) 819 WP_010905298.1 DNA-formamidopyrimidine glycosylase -
  LL229_RS02505 (LL229_0455) recA 438294..439457 (+) 1164 WP_003131629.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 41477.31 Da        Isoelectric Point: 5.1619

>NTDB_id=644946 LL229_RS02505 WP_003131629.1 438294..439457(+) (recA) [Lactococcus lactis subsp. lactis strain 229]
MATKKKTNFDDITKKYGAERDKALADALALIEKDFGKGSLMRLGEAANQKVSVVSSGSLALDIALGAGGYPKGRIVEIYG
PESSGKTTVALHAVAAVQKEGGIAAFIDAENALDPEYAKALGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSV
AALVPKAEIDGEIGDSSVGLQARMMSQAMRKLAGHINKTKTTAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLDVR
GSTKIEEGSGDNKTQIGKITKIKVVKNKVAPPFKVALVDIMFGEGISRTGELLNIAVDEGIIKKSGAWFAYNDEKIGQGA
EKAKNYLKEHQEIFDEIDHKVRTAHGLLDEAEVAETTEDTSTKAKATKAKKEEKVVETEEIELELED

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=644946 LL229_RS02505 WP_003131629.1 438294..439457(+) (recA) [Lactococcus lactis subsp. lactis strain 229]
TTGGCAACAAAGAAAAAAACAAATTTTGATGATATTACCAAAAAATATGGCGCTGAACGTGACAAAGCTTTGGCAGATGC
ACTTGCTCTGATTGAAAAAGACTTTGGGAAAGGTTCACTTATGCGACTTGGCGAAGCAGCCAACCAGAAAGTGTCAGTAG
TAAGTTCAGGCTCACTTGCACTTGATATTGCGCTTGGTGCAGGTGGATATCCTAAAGGACGTATCGTTGAAATCTACGGA
CCAGAATCTTCTGGTAAAACAACAGTCGCTCTTCATGCCGTTGCAGCGGTTCAAAAAGAAGGTGGAATTGCAGCCTTTAT
CGATGCTGAAAATGCGCTTGACCCAGAATATGCAAAAGCGCTCGGTGTCAATATCGATGAACTTTTACTTTCACAACCAG
ACTATGGTGAACAAGGGCTTCAAATTGCTGAAAAATTGATTACATCTGGTGCAGTTGACTTAGTTGTTATTGACTCAGTT
GCAGCTTTGGTACCTAAAGCCGAAATTGATGGTGAAATTGGTGACAGTTCAGTTGGGCTTCAAGCTCGTATGATGTCACA
AGCCATGCGTAAACTTGCAGGACATATTAATAAAACAAAAACAACAGCTATTTTCATCAACCAATTGCGTGAAAAAGTTG
GGGTTATGTTTGGTTCGCCAGAAACAACACCTGGTGGTCGTGCATTGAAATTCTACGCTTCTGTACGTCTTGATGTACGT
GGTTCAACAAAAATCGAAGAAGGTTCTGGAGATAACAAGACCCAAATCGGTAAAATCACAAAAATCAAAGTCGTTAAAAA
TAAAGTGGCTCCACCATTCAAGGTTGCTCTCGTAGATATCATGTTCGGTGAAGGAATTTCAAGAACCGGTGAACTTTTAA
ACATTGCTGTTGATGAAGGAATCATCAAAAAATCAGGCGCTTGGTTTGCTTACAATGACGAAAAAATTGGTCAAGGAGCA
GAAAAAGCGAAGAACTATCTCAAAGAACATCAAGAAATCTTTGATGAAATTGACCATAAAGTTCGTACCGCACACGGTCT
TCTTGATGAAGCAGAAGTAGCAGAAACTACAGAAGATACTTCAACAAAAGCTAAGGCAACTAAAGCTAAAAAAGAAGAAA
AAGTAGTCGAAACTGAAGAAATTGAACTCGAACTTGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X0R6X4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Lactococcus lactis subsp. cremoris KW2

98.023

91.473

0.897
  recA Streptococcus pneumoniae D39

75.844

99.483

0.755
  recA Streptococcus pneumoniae R6

75.844

99.483

0.755
  recA Streptococcus pneumoniae TIGR4

75.844

99.483

0.755
  recA Streptococcus pneumoniae Rx1

75.844

99.483

0.755
  recA Streptococcus mitis NCTC 12261

74.805

99.483

0.744
  recA Streptococcus mitis SK321

74.286

99.483

0.739
  recA Streptococcus mutans UA159

73.698

99.225

0.731
  recA Streptococcus pyogenes NZ131

79.251

89.664

0.711
  recA Latilactobacillus sakei subsp. sakei 23K

69.006

88.372

0.61
  recA Bacillus subtilis subsp. subtilis str. 168

65.455

85.271

0.558
  recA Glaesserella parasuis strain SC1401

54.545

99.483

0.543
  recA Vibrio cholerae strain A1552

59.42

89.147

0.53
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.42

89.147

0.53
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.094

85.013

0.519
  recA Neisseria gonorrhoeae strain FA1090

59.697

85.271

0.509
  recA Neisseria gonorrhoeae MS11

59.697

85.271

0.509
  recA Neisseria gonorrhoeae MS11

59.697

85.271

0.509
  recA Acinetobacter baylyi ADP1

59.752

83.463

0.499
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.202

84.238

0.499
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.716

84.496

0.496
  recA Helicobacter pylori strain NCTC11637

58.055

85.013

0.494
  recA Helicobacter pylori 26695

58.055

85.013

0.494
  recA Acinetobacter baumannii D1279779

59.133

83.463

0.494
  recA Ralstonia pseudosolanacearum GMI1000

60.252

81.912

0.494
  recA Pseudomonas stutzeri DSM 10701

58.824

83.463

0.491