Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   L0Y94_RS15740 Genome accession   NZ_CP090782
Coordinates   654516..655589 (+) Length   357 a.a.
NCBI ID   WP_006398386.1    Uniprot ID   -
Organism   Burkholderia multivorans strain 2004Ycf1069VI     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 649516..660589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0Y94_RS15725 (L0Y94_15725) - 650121..651779 (-) 1659 WP_006411653.1 MFS transporter -
  L0Y94_RS15730 (L0Y94_15730) - 652006..653550 (-) 1545 WP_006406511.1 sensor histidine kinase -
  L0Y94_RS15735 (L0Y94_15735) - 653569..654327 (-) 759 WP_045594245.1 response regulator transcription factor -
  L0Y94_RS15740 (L0Y94_15740) recA 654516..655589 (+) 1074 WP_006398386.1 recombinase RecA Machinery gene
  L0Y94_RS15745 (L0Y94_15745) recX 655589..656446 (+) 858 WP_006406509.1 recombination regulator RecX -
  L0Y94_RS15750 (L0Y94_15750) - 656593..657192 (+) 600 WP_035488916.1 DUF2889 domain-containing protein -
  L0Y94_RS15755 (L0Y94_15755) sucC 657261..658427 (+) 1167 WP_006406507.1 ADP-forming succinate--CoA ligase subunit beta -
  L0Y94_RS15760 (L0Y94_15760) sucD 658492..659373 (+) 882 WP_006398391.1 succinate--CoA ligase subunit alpha -
  L0Y94_RS15765 (L0Y94_15765) - 659531..660235 (+) 705 WP_006398392.1 TerC family protein -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38287.70 Da        Isoelectric Point: 4.7228

>NTDB_id=644775 L0Y94_RS15740 WP_006398386.1 654516..655589(+) (recA) [Burkholderia multivorans strain 2004Ycf1069VI]
MEESKKGSGMTAEKSKALAAALAQIEKQFGKGSIMRMGDGEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSG
KTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVP
KAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSI
KKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRE
NPEIAREIENRIRESLGVAAMPDGAGHDEAEAMDEEE

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=644775 L0Y94_RS15740 WP_006398386.1 654516..655589(+) (recA) [Burkholderia multivorans strain 2004Ycf1069VI]
ATGGAAGAAAGCAAGAAGGGCTCCGGGATGACCGCCGAGAAGAGCAAGGCGCTGGCTGCCGCACTCGCGCAGATCGAGAA
GCAGTTCGGCAAAGGGTCGATCATGCGCATGGGCGACGGCGAGGCGGCCGAGGACATCCAGGTCGTGTCCACGGGCTCGC
TCGGGCTCGACATCGCACTGGGCGTCGGCGGCCTGCCGCGCGGCCGCGTGGTCGAGATCTACGGGCCGGAATCGTCCGGC
AAGACCACGCTCACGCTGCAGGTCATCGCCGAGCTGCAGAAGCTGGGCGGTACCGCAGCGTTCATCGACGCCGAGCACGC
GCTCGACGTCCAGTACGCGGCGAAGCTCGGCGTCAACGTGCCGGATCTGCTGATCTCTCAGCCGGACACCGGCGAGCAGG
CGCTCGAAATCACCGACGCGCTGGTGCGCTCGGGCTCGATCGACATGATCGTCATCGACTCGGTCGCGGCGCTCGTGCCG
AAGGCCGAAATCGAAGGCGAGATGGGCGATTCGCTGCCGGGCCTGCAGGCGCGCCTGATGTCGCAGGCGCTGCGCAAGCT
GACGGGCACGATCAAGCGCACGAACTGCCTCGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCA
ACCCGGAAACCACGACGGGCGGCAACGCGCTGAAGTTCTATTCGTCGGTGCGTCTCGACATCCGCCGGATCGGCTCGATC
AAGAAGAACGACGAAGTGATCGGCAACGAAACGCGCGTGAAGGTCGTCAAGAACAAGGTGTCGCCGCCGTTCCGCGAAGC
GATCTTCGACATCCTGTACGGCGAGGGCATTTCGCGTCAGGGCGAGATCATCGATCTCGGCGTGCAGGCGAAGATCGTCG
ACAAGGCGGGCGCCTGGTACAGCTACAACGGCGAGAAGATCGGTCAGGGCAAGGACAACGCGCGTGAATTCCTGCGCGAG
AATCCGGAAATCGCGCGCGAGATCGAGAACCGCATTCGTGAATCGCTCGGCGTTGCCGCCATGCCGGATGGCGCGGGCCA
CGACGAAGCCGAGGCGATGGACGAAGAAGAGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

86.217

95.518

0.824
  recA Neisseria gonorrhoeae MS11

72.126

97.479

0.703
  recA Neisseria gonorrhoeae MS11

72.126

97.479

0.703
  recA Neisseria gonorrhoeae strain FA1090

72.126

97.479

0.703
  recA Acinetobacter baylyi ADP1

72.222

95.798

0.692
  recA Glaesserella parasuis strain SC1401

66.129

100

0.689
  recA Pseudomonas stutzeri DSM 10701

74.32

92.717

0.689
  recA Acinetobacter baumannii D1279779

72.477

91.597

0.664
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.865

91.597

0.658
  recA Vibrio cholerae strain A1552

71.865

91.597

0.658
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.431

96.078

0.619
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.046

92.157

0.599
  recA Bacillus subtilis subsp. subtilis str. 168

65.138

91.597

0.597
  recA Helicobacter pylori 26695

63.393

94.118

0.597
  recA Helicobacter pylori strain NCTC11637

63.095

94.118

0.594
  recA Streptococcus pneumoniae Rx1

59.942

95.798

0.574
  recA Streptococcus pneumoniae TIGR4

59.942

95.798

0.574
  recA Streptococcus pneumoniae R6

59.942

95.798

0.574
  recA Streptococcus pneumoniae D39

59.942

95.798

0.574
  recA Latilactobacillus sakei subsp. sakei 23K

61.934

92.717

0.574
  recA Streptococcus mutans UA159

61.818

92.437

0.571
  recA Streptococcus mitis NCTC 12261

61.027

92.717

0.566
  recA Streptococcus mitis SK321

60.725

92.717

0.563
  recA Lactococcus lactis subsp. cremoris KW2

59.76

93.277

0.557
  recA Streptococcus pyogenes NZ131

59.878

92.157

0.552
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

89.916

0.549