Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   L0Z67_RS13475 Genome accession   NZ_CP090667
Coordinates   2890323..2891369 (-) Length   348 a.a.
NCBI ID   WP_193987749.1    Uniprot ID   -
Organism   Pseudoalteromonas sp. PB2-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2885323..2896369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0Z67_RS13465 - 2886289..2887458 (+) 1170 WP_405128126.1 DcaP family trimeric outer membrane transporter -
  L0Z67_RS13470 - 2887608..2889716 (+) 2109 WP_062568805.1 TonB-dependent siderophore receptor -
  L0Z67_RS13475 recA 2890323..2891369 (-) 1047 WP_193987749.1 recombinase RecA Machinery gene
  L0Z67_RS13480 - 2891428..2891925 (-) 498 WP_193987750.1 CinA family protein -
  L0Z67_RS13485 mutS 2891947..2894517 (+) 2571 WP_062568802.1 DNA mismatch repair protein MutS -
  L0Z67_RS13490 rpoS 2894613..2895596 (-) 984 WP_062568801.1 RNA polymerase sigma factor RpoS -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37538.07 Da        Isoelectric Point: 5.0466

>NTDB_id=644289 L0Z67_RS13475 WP_193987749.1 2890323..2891369(-) (recA) [Pseudoalteromonas sp. PB2-1]
MNDNKQKALDAALSQIERQFGKGSIMKLGDNKALDIEAISTGSLGIDIALGIGGLPTGRIVEIYGPESSGKTTLTLQVIA
QAQKQGKTCAFVDAEHALDPVYAQKLGVNIDELLVSQPDTGEQALEICDMLVRSSAVDVVIVDSVAALTPKAEIEGDMGD
SHMGLQARLMSQALRKLTGNIKRSNTLCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSVKEGDEVVGNE
TRVKIVKNKVAPPFKQAEFIIMYGEGISKHGELIDLGVKHKLVEKSGAWYSYNGNKVGQGKANSIKFLKDNPEIADEIEG
KLREMLLLQATVQPEDGEDAGLIAEDEL

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=644289 L0Z67_RS13475 WP_193987749.1 2890323..2891369(-) (recA) [Pseudoalteromonas sp. PB2-1]
ATGAACGATAACAAACAAAAAGCGTTGGACGCTGCTTTATCACAAATTGAACGTCAATTTGGTAAAGGTTCAATTATGAA
ATTGGGTGATAATAAAGCCCTTGATATTGAAGCTATCTCGACAGGTTCACTTGGTATTGATATCGCGTTAGGTATAGGTG
GTTTACCGACAGGCCGTATCGTTGAAATATATGGTCCTGAATCATCAGGTAAAACAACGCTTACTTTACAAGTTATCGCT
CAAGCTCAAAAGCAAGGTAAAACATGTGCGTTCGTTGACGCTGAGCATGCACTTGACCCTGTGTATGCACAAAAACTAGG
TGTAAACATTGATGAGTTACTTGTTTCCCAACCAGATACGGGCGAGCAAGCATTAGAAATTTGTGACATGTTAGTACGTT
CAAGCGCTGTAGATGTAGTGATTGTTGACTCGGTTGCTGCACTGACACCAAAAGCTGAAATTGAAGGCGACATGGGTGAC
TCACATATGGGCCTACAAGCTCGTTTAATGTCGCAAGCACTTCGTAAGTTAACGGGTAACATTAAACGCTCAAATACACT
GTGTATTTTCATTAACCAAATCCGTATGAAAATTGGTGTTATGTTTGGTAACCCAGAAACAACTACGGGTGGTAATGCGC
TTAAGTTTTACGCTTCTGTACGTTTAGATATTCGTCGCATCGGCTCAGTGAAAGAAGGTGACGAAGTCGTTGGTAATGAA
ACCCGCGTGAAAATCGTTAAGAATAAAGTTGCGCCGCCATTTAAACAGGCTGAATTCATCATTATGTACGGTGAAGGTAT
CTCTAAACATGGCGAGCTAATTGATTTAGGTGTTAAGCATAAACTTGTTGAAAAGTCAGGTGCTTGGTACAGCTATAATG
GTAATAAAGTCGGCCAAGGTAAAGCTAACTCAATTAAGTTCTTAAAAGATAACCCTGAGATCGCAGATGAAATCGAAGGC
AAACTACGCGAGATGCTATTACTGCAAGCCACTGTACAACCAGAAGATGGTGAAGATGCAGGCTTAATCGCAGAAGATGA
GCTATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

77.971

99.138

0.773
  recA Vibrio cholerae O1 biovar El Tor strain E7946

77.971

99.138

0.773
  recA Pseudomonas stutzeri DSM 10701

75.362

99.138

0.747
  recA Glaesserella parasuis strain SC1401

72.238

100

0.733
  recA Acinetobacter baumannii D1279779

72.701

100

0.727
  recA Acinetobacter baylyi ADP1

74.474

95.69

0.713
  recA Neisseria gonorrhoeae MS11

71.802

98.851

0.71
  recA Neisseria gonorrhoeae MS11

71.802

98.851

0.71
  recA Neisseria gonorrhoeae strain FA1090

71.802

98.851

0.71
  recA Ralstonia pseudosolanacearum GMI1000

73.955

89.368

0.661
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.339

91.667

0.626
  recA Bacillus subtilis subsp. subtilis str. 168

67.601

92.241

0.624
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.955

95.115

0.618
  recA Helicobacter pylori strain NCTC11637

62.687

96.264

0.603
  recA Helicobacter pylori 26695

62.687

96.264

0.603
  recA Streptococcus mitis SK321

59.483

100

0.595
  recA Streptococcus mitis NCTC 12261

62.539

92.816

0.58
  recA Streptococcus mutans UA159

61.468

93.966

0.578
  recA Streptococcus pneumoniae TIGR4

62.229

92.816

0.578
  recA Streptococcus pneumoniae D39

62.229

92.816

0.578
  recA Streptococcus pneumoniae R6

62.229

92.816

0.578
  recA Streptococcus pneumoniae Rx1

62.229

92.816

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.382

91.667

0.572
  recA Streptococcus pyogenes NZ131

60.55

93.966

0.569
  recA Latilactobacillus sakei subsp. sakei 23K

61.059

92.241

0.563
  recA Lactococcus lactis subsp. cremoris KW2

58.204

92.816

0.54