Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   L0B74_RS07485 Genome accession   NZ_CP090603
Coordinates   1500198..1501292 (-) Length   364 a.a.
NCBI ID   WP_013437470.1    Uniprot ID   -
Organism   Lactobacillus amylovorus strain S1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1495198..1506292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0B74_RS07470 - 1496483..1497145 (+) 663 WP_013437473.1 YigZ family protein -
  L0B74_RS07475 - 1497179..1498345 (-) 1167 WP_013437472.1 MraY family glycosyltransferase -
  L0B74_RS07480 rny 1498450..1500081 (-) 1632 WP_013437471.1 ribonuclease Y -
  L0B74_RS07485 recA 1500198..1501292 (-) 1095 WP_013437470.1 recombinase RecA Machinery gene
  L0B74_RS07490 pgsA 1501481..1502041 (-) 561 WP_013437469.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  L0B74_RS07495 - 1502064..1503176 (-) 1113 WP_249905475.1 helix-turn-helix domain-containing protein -
  L0B74_RS07500 - 1503244..1503972 (-) 729 WP_056984897.1 SDR family oxidoreductase -
  L0B74_RS07505 - 1503979..1505229 (-) 1251 WP_052542895.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 39459.79 Da        Isoelectric Point: 5.3981

>NTDB_id=643894 L0B74_RS07485 WP_013437470.1 1500198..1501292(-) (recA) [Lactobacillus amylovorus strain S1]
MAKDEKQAALDAALKKIEKNFGKGAVMRMGEKADTQISTVPTGSLALDAAIGVGGYPRGRIIEIYGPESSGKTTVALHAV
AEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMG
DAHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSGDVLGN
RVKIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAADKDIIDKAGSWYSYKNDRIGQGRENAKKYLEDHPDIYQDIQ
EQVRKAYGIDEKSIADRENPEKIKEKHEEAQQEESDAKDAEKTK

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=643894 L0B74_RS07485 WP_013437470.1 1500198..1501292(-) (recA) [Lactobacillus amylovorus strain S1]
ATGGCCAAAGATGAAAAGCAAGCTGCATTAGACGCAGCTCTTAAGAAAATTGAAAAAAACTTTGGAAAAGGTGCCGTTAT
GCGTATGGGTGAAAAAGCAGATACGCAAATTTCAACAGTGCCAACCGGTTCACTTGCCTTAGATGCCGCTATTGGTGTTG
GTGGTTATCCTCGTGGCAGAATTATCGAAATTTATGGTCCAGAATCATCTGGTAAGACTACTGTAGCCCTTCATGCAGTT
GCTGAAGTGCAAAAACGTGGCGGAACAGCTGCTTATATCGATGCCGAAAACGCAATGGATCCGGCTTACGCAGAAGCTCT
GGGCGTGGACATTGATTCATTGATTCTTTCACAACCTAATACTGGTGAAGAAGGTTTGCAAATTGCCGATACCTTGATTT
CCAGTGGTGCGATTGACATTGTGGTAGTTGACTCTGTAGCTGCCTTAGTACCACGTGCCGAAATTGAAGGTGAGATGGGG
GATGCTCACGTCGGCTTGCAAGCTCGTTTGATGAGTCAAGCTTTGCGTAAATTATCAGGTACCATTTCTAAGACTAAGAC
AATTGCGATCTTTATTAACCAGATCCGTGAAAAAGTTGGTGTCATGTTTGGTAACCCTGAAACCACACCAGGTGGTCGAG
CACTTAAGTTCTACTCAACTATTCGTCTTGAAGTAAGAAGAGCAGAACAAATTAAGCAATCAGGTGATGTTCTTGGTAAC
CGCGTTAAGATTAAGGTTGTTAAGAACAAGGTTGCTCCACCATTCAAGGTTGCCGAAGTTGATATCATGTATGGCAAGGG
TATTTCACAAAGTGGTGAATTGCTTGATATGGCTGCCGACAAGGATATTATTGATAAGGCTGGTTCATGGTACTCATACA
AGAATGACCGAATTGGCCAAGGGCGTGAGAATGCCAAGAAGTATCTTGAAGATCACCCAGATATTTATCAAGATATTCAA
GAACAGGTTCGTAAGGCTTATGGAATTGACGAAAAGTCAATTGCTGATCGCGAGAATCCTGAAAAGATCAAGGAAAAGCA
TGAAGAAGCACAACAAGAAGAATCTGATGCCAAAGATGCTGAAAAAACTAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

81.873

90.934

0.745
  recA Bacillus subtilis subsp. subtilis str. 168

73.03

90.659

0.662
  recA Streptococcus pneumoniae D39

67.227

98.077

0.659
  recA Streptococcus pneumoniae R6

67.227

98.077

0.659
  recA Streptococcus pneumoniae Rx1

67.227

98.077

0.659
  recA Streptococcus pneumoniae TIGR4

67.227

98.077

0.659
  recA Streptococcus mutans UA159

66.006

96.978

0.64
  recA Streptococcus mitis NCTC 12261

68.129

93.956

0.64
  recA Streptococcus pyogenes NZ131

69.605

90.385

0.629
  recA Streptococcus mitis SK321

68.997

90.385

0.624
  recA Lactococcus lactis subsp. cremoris KW2

65.766

91.484

0.602
  recA Neisseria gonorrhoeae MS11

59.078

95.33

0.563
  recA Neisseria gonorrhoeae MS11

59.078

95.33

0.563
  recA Neisseria gonorrhoeae strain FA1090

59.078

95.33

0.563
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.366

90.11

0.544
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.522

93.132

0.536
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.062

88.736

0.533
  recA Acinetobacter baylyi ADP1

59.317

88.462

0.525
  recA Acinetobacter baumannii D1279779

59.317

88.462

0.525
  recA Helicobacter pylori strain NCTC11637

55.848

93.956

0.525
  recA Helicobacter pylori 26695

55.848

93.956

0.525
  recA Pseudomonas stutzeri DSM 10701

58.879

88.187

0.519
  recA Glaesserella parasuis strain SC1401

52.707

96.429

0.508
  recA Ralstonia pseudosolanacearum GMI1000

58.786

85.989

0.505
  recA Vibrio cholerae strain A1552

56.832

88.462

0.503
  recA Vibrio cholerae O1 biovar El Tor strain E7946

56.832

88.462

0.503