Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IHC88_RS02600 Genome accession   NZ_CP090498
Coordinates   512061..513116 (+) Length   351 a.a.
NCBI ID   WP_237033378.1    Uniprot ID   -
Organism   Photobacterium damselae subsp. damselae strain CSP DAM2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 507061..518116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHC88_RS02585 (IHC88_02585) rpoS 507468..508469 (+) 1002 WP_065170657.1 RNA polymerase sigma factor RpoS -
  IHC88_RS02590 (IHC88_02590) mutS 508619..511189 (-) 2571 WP_376788114.1 DNA mismatch repair protein MutS -
  IHC88_RS02595 (IHC88_02595) pncC 511435..511923 (+) 489 WP_237033377.1 nicotinamide-nucleotide amidase -
  IHC88_RS02600 (IHC88_02600) recA 512061..513116 (+) 1056 WP_237033378.1 recombinase RecA Machinery gene
  IHC88_RS02605 (IHC88_02605) kch 513305..514537 (+) 1233 WP_005297823.1 voltage-gated potassium channel protein -
  IHC88_RS02610 (IHC88_02610) alaS 514814..517435 (+) 2622 WP_237029723.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37723.19 Da        Isoelectric Point: 4.8741

>NTDB_id=642941 IHC88_RS02600 WP_237033378.1 512061..513116(+) (recA) [Photobacterium damselae subsp. damselae strain CSP DAM2]
MDENKQKALAAALGQIEKQFGKGSIMKLGDNRTMDIETVSTGSLALDIALGAGGLPMGRIVEIFGPESSGKTTLTLETIA
SAQRQGKTCAFIDAEHALDPIYAKKLGVDIDQLLVSQPDTGEQALEICDALARSGAVDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKDGEEVVGNE
TRIKVVKNKIAAPFKQAETQILYGQGFNRVGELIDLGVKQKLIEKAGAWYSYKGDKIGQGKANAGKFLTDNPAIADEIEK
QIRELLLTPPQEETTEDASLDAIEAGEDKAF

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=642941 IHC88_RS02600 WP_237033378.1 512061..513116(+) (recA) [Photobacterium damselae subsp. damselae strain CSP DAM2]
ATGGACGAGAATAAACAAAAGGCTCTTGCCGCTGCGTTAGGCCAAATTGAGAAGCAGTTCGGTAAAGGCTCTATCATGAA
GCTTGGCGATAACCGTACTATGGATATCGAAACCGTATCAACTGGTTCGTTAGCTCTTGATATCGCATTGGGTGCTGGTG
GTTTACCTATGGGCCGTATCGTTGAGATTTTTGGTCCTGAATCATCAGGTAAAACAACATTAACATTAGAAACCATCGCG
TCAGCTCAGCGCCAAGGTAAAACTTGTGCTTTTATTGATGCTGAGCACGCACTGGATCCTATTTATGCTAAGAAATTAGG
CGTAGATATTGACCAACTTTTGGTTTCTCAGCCAGATACTGGTGAGCAAGCGTTAGAGATTTGTGATGCATTAGCACGCT
CTGGTGCTGTTGACCTTATTGTTGTCGACTCCGTTGCTGCATTAACACCAAAAGCAGAAATTGAAGGCGAAATGGGTGAC
TCACACATGGGTCTGCAAGCTCGTATGCTGTCTCAAGCAATGCGTAAGCTAACGGGTAACCTAAAGCAGTCTAACTGTAT
GTGTATTTTCATCAACCAGATCCGTATGAAGATCGGTGTGATGTTCGGTAATCCAGAAACAACAACTGGTGGTAATGCAC
TTAAGTTTTACGCTTCTGTTCGTCTTGATATCCGTCGTACAGGTTCAATCAAAGATGGCGAAGAAGTTGTTGGTAATGAA
ACTCGTATTAAAGTGGTGAAGAACAAAATCGCTGCACCATTTAAGCAAGCTGAAACGCAAATTCTGTACGGACAAGGCTT
TAACCGTGTTGGTGAGCTGATCGACCTTGGTGTTAAGCAAAAGCTAATTGAAAAAGCTGGTGCTTGGTACAGTTATAAAG
GCGATAAGATTGGTCAAGGTAAAGCAAATGCGGGTAAATTCTTAACCGATAATCCAGCTATTGCCGATGAGATCGAAAAA
CAAATTCGTGAGTTGTTATTAACACCACCGCAAGAAGAAACAACTGAAGATGCTTCTCTTGATGCTATCGAAGCTGGTGA
AGATAAAGCATTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

89.058

93.732

0.835
  recA Vibrio cholerae O1 biovar El Tor strain E7946

89.058

93.732

0.835
  recA Pseudomonas stutzeri DSM 10701

74.405

95.726

0.712
  recA Acinetobacter baumannii D1279779

74.695

93.447

0.698
  recA Acinetobacter baylyi ADP1

73.353

95.157

0.698
  recA Glaesserella parasuis strain SC1401

71.341

93.447

0.667
  recA Neisseria gonorrhoeae MS11

69.939

92.877

0.65
  recA Neisseria gonorrhoeae MS11

69.939

92.877

0.65
  recA Neisseria gonorrhoeae strain FA1090

69.939

92.877

0.65
  recA Ralstonia pseudosolanacearum GMI1000

69.207

93.447

0.647
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.506

92.308

0.595
  recA Bacillus subtilis subsp. subtilis str. 168

64.174

91.453

0.587
  recA Streptococcus pneumoniae R6

61.012

95.726

0.584
  recA Streptococcus pneumoniae Rx1

61.012

95.726

0.584
  recA Streptococcus pneumoniae D39

61.012

95.726

0.584
  recA Streptococcus pneumoniae TIGR4

61.012

95.726

0.584
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.329

94.302

0.578
  recA Streptococcus mitis NCTC 12261

62.539

92.023

0.576
  recA Latilactobacillus sakei subsp. sakei 23K

58.892

97.721

0.575
  recA Helicobacter pylori 26695

61.846

92.593

0.573
  recA Streptococcus mitis SK321

61.92

92.023

0.57
  recA Helicobacter pylori strain NCTC11637

61.538

92.593

0.57
  recA Streptococcus mutans UA159

61.538

92.593

0.57
  recA Streptococcus pyogenes NZ131

60.308

92.593

0.558
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.509

92.877

0.553
  recA Lactococcus lactis subsp. cremoris KW2

58.514

92.023

0.538