Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LZQ00_RS14130 Genome accession   NZ_CP090446
Coordinates   3298549..3299568 (+) Length   339 a.a.
NCBI ID   WP_234509921.1    Uniprot ID   -
Organism   Sphingobacterium sp. SRCM116780     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3293549..3304568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZQ00_RS14110 (LZQ00_14110) - 3293558..3295711 (-) 2154 WP_234509917.1 S9 family peptidase -
  LZQ00_RS14115 (LZQ00_14115) - 3295861..3297492 (+) 1632 WP_234509918.1 S8 family serine peptidase -
  LZQ00_RS14120 (LZQ00_14120) - 3297559..3297744 (+) 186 WP_234509919.1 hypothetical protein -
  LZQ00_RS14125 (LZQ00_14125) nth 3297798..3298466 (+) 669 WP_234509920.1 endonuclease III -
  LZQ00_RS14130 (LZQ00_14130) recA 3298549..3299568 (+) 1020 WP_234509921.1 recombinase RecA Machinery gene
  LZQ00_RS14135 (LZQ00_14135) - 3299646..3300419 (+) 774 WP_234509922.1 endonuclease/exonuclease/phosphatase family protein -
  LZQ00_RS14140 (LZQ00_14140) pruA 3300577..3302214 (-) 1638 WP_234509923.1 L-glutamate gamma-semialdehyde dehydrogenase -
  LZQ00_RS14145 (LZQ00_14145) msrA 3302312..3302935 (-) 624 WP_234509924.1 peptide-methionine (S)-S-oxide reductase MsrA -
  LZQ00_RS14150 (LZQ00_14150) - 3303117..3303725 (-) 609 WP_234509925.1 superoxide dismutase -
  LZQ00_RS14155 (LZQ00_14155) - 3303828..3304295 (-) 468 WP_234509926.1 nucleoside deaminase -

Sequence

Protein


Download         Length: 339 a.a.        Molecular weight: 36273.65 Da        Isoelectric Point: 4.9476

>NTDB_id=642508 LZQ00_RS14130 WP_234509921.1 3298549..3299568(+) (recA) [Sphingobacterium sp. SRCM116780]
MSSPDKLKALQLTLDKLEKSYGKGAIMKLGDTAVEPIESISTGSLGLDIALGIGGVPKGRIIEIYGPESSGKTTLATHIV
AEAQKLGGIAAIIDAEHAFDKYYAQKLGVDVENLLIAQPDNGEQGLEIADNLIRSGAIDVIVIDSVAALVPKGEIEGEMG
DSKMGLQARLMSQALRKLTGTISKTNCCCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRTSQIKDSDEVSGN
RVKVKIVKNKVAPPFRIAEFDIMFGEGISKVGEIIDLGVEYNIIKKAGSWFSYGETKLGQGRDAVKALLHDNPDLADELE
AKIRAEVSGVDPNLVSEEG

Nucleotide


Download         Length: 1020 bp        

>NTDB_id=642508 LZQ00_RS14130 WP_234509921.1 3298549..3299568(+) (recA) [Sphingobacterium sp. SRCM116780]
ATGAGCAGTCCAGACAAATTAAAAGCGTTACAGCTAACATTAGATAAATTAGAAAAATCATATGGTAAAGGCGCCATTAT
GAAATTAGGTGACACAGCTGTTGAGCCAATCGAATCAATCTCAACAGGTTCTTTGGGTCTTGATATTGCATTAGGTATTG
GCGGTGTTCCAAAGGGGCGTATTATTGAAATCTATGGCCCTGAGTCTTCAGGTAAAACAACTTTAGCGACTCATATCGTT
GCTGAAGCTCAAAAGTTAGGAGGTATTGCAGCAATTATAGATGCTGAACATGCCTTTGATAAATATTACGCTCAGAAATT
AGGCGTTGATGTAGAAAATCTATTGATTGCACAACCTGATAATGGTGAGCAAGGGTTAGAAATTGCGGATAACTTAATTC
GCTCAGGAGCTATTGATGTTATCGTCATTGACTCCGTTGCAGCTTTAGTACCTAAAGGTGAGATTGAAGGTGAGATGGGA
GATTCCAAAATGGGACTTCAGGCACGTTTAATGTCTCAAGCTTTACGTAAATTAACAGGTACTATTTCAAAAACTAATTG
CTGTTGTATTTTTATCAACCAATTACGTGAAAAAATCGGTGTTATGTTTGGTAATCCAGAAACAACGACTGGTGGTAACG
CATTAAAATTCTACGCTTCTGTACGTTTGGATATTCGTCGTACTTCTCAAATCAAAGATTCAGATGAAGTGTCTGGTAAC
CGCGTAAAAGTAAAAATTGTTAAAAATAAAGTAGCTCCTCCATTCCGTATCGCAGAATTTGATATCATGTTTGGCGAAGG
TATTTCTAAAGTTGGTGAAATCATCGATTTAGGAGTTGAATATAATATCATTAAAAAAGCAGGTTCATGGTTTAGCTATG
GAGAAACGAAATTGGGACAAGGTCGTGATGCCGTAAAAGCATTATTACATGACAATCCTGATTTAGCAGATGAATTAGAA
GCTAAAATTAGAGCGGAAGTTTCTGGTGTAGATCCTAATCTAGTTTCAGAAGAAGGTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

71.257

98.525

0.702
  recA Neisseria gonorrhoeae MS11

65.569

98.525

0.646
  recA Neisseria gonorrhoeae MS11

65.569

98.525

0.646
  recA Neisseria gonorrhoeae strain FA1090

65.569

98.525

0.646
  recA Ralstonia pseudosolanacearum GMI1000

68.671

93.215

0.64
  recA Helicobacter pylori 26695

65.741

95.575

0.628
  recA Glaesserella parasuis strain SC1401

64.545

97.345

0.628
  recA Helicobacter pylori strain NCTC11637

65.432

95.575

0.625
  recA Bacillus subtilis subsp. subtilis str. 168

63.526

97.05

0.617
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.109

94.69

0.617
  recA Acinetobacter baylyi ADP1

64.396

95.28

0.614
  recA Acinetobacter baumannii D1279779

63.777

95.28

0.608
  recA Pseudomonas stutzeri DSM 10701

63.467

95.28

0.605
  recA Streptococcus pyogenes NZ131

62.037

95.575

0.593
  recA Streptococcus pneumoniae D39

59.467

99.705

0.593
  recA Streptococcus pneumoniae TIGR4

59.467

99.705

0.593
  recA Streptococcus pneumoniae Rx1

59.467

99.705

0.593
  recA Streptococcus pneumoniae R6

59.467

99.705

0.593
  recA Streptococcus mitis NCTC 12261

59.347

99.41

0.59
  recA Streptococcus mitis SK321

59.05

99.41

0.587
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.875

94.395

0.584
  recA Vibrio cholerae strain A1552

61.875

94.395

0.584
  recA Lactococcus lactis subsp. cremoris KW2

60.87

94.985

0.578
  recA Latilactobacillus sakei subsp. sakei 23K

60.308

95.87

0.578
  recA Streptococcus mutans UA159

58.896

96.165

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.79

95.575

0.543