Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LZ683_RS27485 Genome accession   NZ_CP090445
Coordinates   5869718..5870827 (-) Length   369 a.a.
NCBI ID   WP_256495281.1    Uniprot ID   -
Organism   Comamonas testosteroni strain X13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5864718..5875827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ683_RS27465 (LZ683_27435) argC 5866195..5867127 (+) 933 WP_003060061.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  LZ683_RS27470 (LZ683_27440) yddG 5867328..5868248 (+) 921 WP_182285101.1 aromatic amino acid DMT transporter YddG -
  LZ683_RS27475 (LZ683_27445) - 5868274..5869008 (-) 735 WP_182285102.1 hypothetical protein -
  LZ683_RS27480 (LZ683_27450) recX 5869060..5869536 (-) 477 WP_182285103.1 recombination regulator RecX -
  LZ683_RS27485 (LZ683_27455) recA 5869718..5870827 (-) 1110 WP_256495281.1 recombinase RecA Machinery gene
  LZ683_RS27490 (LZ683_27460) - 5870966..5871457 (+) 492 WP_275053774.1 MarR family transcriptional regulator -
  LZ683_RS27495 (LZ683_27465) - 5871567..5872244 (+) 678 WP_003064757.1 response regulator transcription factor -
  LZ683_RS27500 (LZ683_27470) - 5872355..5873797 (+) 1443 WP_182285106.1 sensor histidine kinase -
  LZ683_RS27505 (LZ683_27475) - 5874017..5874994 (+) 978 WP_003064761.1 tripartite tricarboxylate transporter substrate binding protein BugE -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39089.94 Da        Isoelectric Point: 5.3884

>NTDB_id=642503 LZ683_RS27485 WP_256495281.1 5869718..5870827(-) (recA) [Comamonas testosteroni strain X13]
MNAIAKTNDANSEKAKALAAALAQIEKQFGKGTIMKLGEGEAIEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSG
KTTLTLQVIAEMQKQGGTCAFIDAEHALDTSYAQKLGVNLSDVLISQPDTGEQALEICDSLVRSGAVDLIVIDSVAALTP
KAEIEGEMGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTI
KKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEILDMGVNAKILEKSGAWYAYNGEKIGQGRDNSREFLRE
NPALAIEIENKVRDSLGIKLLPVEGAAAAEAKPAKGGKGKVDKDGVIEG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=642503 LZ683_RS27485 WP_256495281.1 5869718..5870827(-) (recA) [Comamonas testosteroni strain X13]
ATGAACGCCATCGCCAAGACCAACGACGCCAACAGCGAAAAAGCCAAAGCCCTGGCTGCAGCCCTGGCCCAGATCGAAAA
GCAGTTCGGCAAGGGCACCATCATGAAGCTCGGCGAAGGTGAAGCCATCGAAGACATTCAGGTCGTCTCCACCGGCTCTC
TGGGTCTGGACATCGCTCTGGGCGTGGGTGGTCTGCCCCGTGGTCGCGTGATCGAAATCTACGGTCCCGAATCCTCGGGC
AAGACCACGCTGACGCTGCAGGTCATTGCCGAGATGCAGAAGCAGGGCGGCACCTGCGCCTTTATCGACGCCGAACATGC
GCTGGACACCAGCTACGCCCAGAAGCTGGGCGTGAACCTCAGCGACGTGCTGATCAGCCAGCCCGACACCGGTGAGCAGG
CCCTGGAAATCTGCGACAGCCTGGTGCGCTCGGGTGCCGTGGACCTGATCGTCATCGACTCGGTGGCCGCCTTGACGCCC
AAGGCCGAAATCGAAGGCGAGATGGGCGACGCCCTGCCCGGCCTGCAGGCCCGACTGATGAGCCAGGCCCTGCGCAAGCT
GACGGCCACCATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGTT
CGCCCGAGACCACCACCGGCGGCAATGCGCTGAAGTTCTATGCCTCCGTGCGTCTGGATATCCGCCGCACCGGCACCATC
AAGAAGGGCGACGAGGCCATCGGCAACGAAACCAAGGTCAAGGTCGTGAAGAACAAGGTCTCGCCCCCCTTCAAGACGGC
AGAGTTCGACATTCTGTTTGGTGAAGGCATCAGCCGCGAAGGCGAGATTCTGGACATGGGCGTGAACGCCAAGATTCTGG
AAAAGAGCGGTGCCTGGTATGCCTACAACGGCGAAAAAATCGGCCAGGGCCGCGACAACTCGCGTGAGTTCCTGCGCGAG
AACCCCGCGCTGGCCATCGAAATCGAAAACAAGGTGCGCGATAGCCTGGGCATCAAGCTGCTGCCTGTGGAAGGTGCAGC
GGCTGCCGAAGCCAAGCCTGCCAAGGGCGGCAAGGGCAAGGTGGACAAGGACGGAGTGATTGAAGGCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.758

85.095

0.713
  recA Neisseria gonorrhoeae strain FA1090

69.94

91.057

0.637
  recA Neisseria gonorrhoeae MS11

69.94

91.057

0.637
  recA Neisseria gonorrhoeae MS11

69.94

91.057

0.637
  recA Glaesserella parasuis strain SC1401

69.027

91.87

0.634
  recA Pseudomonas stutzeri DSM 10701

71.472

88.347

0.631
  recA Acinetobacter baylyi ADP1

69.632

88.347

0.615
  recA Acinetobacter baumannii D1279779

69.632

88.347

0.615
  recA Vibrio cholerae strain A1552

69.632

88.347

0.615
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.632

88.347

0.615
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.082

92.683

0.612
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.667

89.431

0.596
  recA Bacillus subtilis subsp. subtilis str. 168

64.22

88.618

0.569
  recA Helicobacter pylori strain NCTC11637

64.024

88.889

0.569
  recA Helicobacter pylori 26695

64.024

88.889

0.569
  recA Latilactobacillus sakei subsp. sakei 23K

61.29

92.412

0.566
  recA Streptococcus mutans UA159

57.222

97.561

0.558
  recA Lactococcus lactis subsp. cremoris KW2

60.714

91.057

0.553
  recA Streptococcus mitis SK321

59.13

93.496

0.553
  recA Streptococcus mitis NCTC 12261

58.841

93.496

0.55
  recA Streptococcus pyogenes NZ131

60.597

90.786

0.55
  recA Streptococcus pneumoniae Rx1

60.423

89.702

0.542
  recA Streptococcus pneumoniae D39

60.423

89.702

0.542
  recA Streptococcus pneumoniae R6

60.423

89.702

0.542
  recA Streptococcus pneumoniae TIGR4

60.423

89.702

0.542
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60

89.431

0.537