Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   X969_RS04225 Genome accession   NC_023075
Coordinates   910729..911796 (+) Length   355 a.a.
NCBI ID   WP_013971339.1    Uniprot ID   V7DAG6
Organism   Pseudomonas monteilii SB3078     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 905729..916796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  X969_RS04210 (X969_04265) fdxA 906834..907157 (-) 324 WP_004375459.1 ferredoxin FdxA -
  X969_RS04215 (X969_04270) mutS 907298..909871 (-) 2574 WP_024086401.1 DNA mismatch repair protein MutS -
  X969_RS04220 (X969_04275) - 910143..910625 (+) 483 WP_013971338.1 CinA family protein -
  X969_RS04225 (X969_04280) recA 910729..911796 (+) 1068 WP_013971339.1 recombinase RecA Machinery gene
  X969_RS04230 (X969_04285) recX 911818..912288 (+) 471 WP_015269215.1 recombination regulator RecX -
  X969_RS04235 (X969_04290) - 912338..913456 (-) 1119 WP_015269216.1 LOG family protein -
  X969_RS04240 (X969_04295) - 913619..913828 (+) 210 WP_004375471.1 hypothetical protein -
  X969_RS04245 (X969_04300) - 913842..914261 (-) 420 WP_013971343.1 quorum-sensing-regulated virulence factor family protein -
  X969_RS04250 (X969_04305) - 914483..915193 (+) 711 WP_013971344.1 tRNA-uridine aminocarboxypropyltransferase -
  X969_RS04255 (X969_04310) erdR 915272..915922 (+) 651 WP_024086402.1 response regulator transcription factor ErdR -
  X969_RS04260 (X969_04315) - 915996..916361 (+) 366 WP_024086403.1 diacylglycerol kinase -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 37501.86 Da        Isoelectric Point: 5.3117

>NTDB_id=64241 X969_RS04225 WP_013971339.1 910729..911796(+) (recA) [Pseudomonas monteilii SB3078]
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKNGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVSQGLVEKSGAWYAYQGNKIGQGKANAAKYLAENPAIGAEIEK
QIREKLLTAGAVAAAGKAAAAEADADDMADADAGY

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=64241 X969_RS04225 WP_013971339.1 910729..911796(+) (recA) [Pseudomonas monteilii SB3078]
ATGGACGACAACAAGAAGCGCGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGCCAATTCGGCAAGGGCGCCGTCATGCG
CATGGGCGACCACGAGCGCCAGGCTATCCCTGCCATCTCCACCGGCTCACTGGGCCTGGACATCGCCCTGGGCATCGGCG
GCCTGCCAAAAGGCCGTATCGTCGAGATCTACGGCCCGGAGTCGTCGGGTAAGACCACGCTGACCCTGTCGGTCATCGCC
GAAGCCCAGAAAAACGGCGCCACCTGTGCCTTCGTCGACGCCGAACACGCCCTCGACCCCGAGTACGCCGGCAAGCTGGG
CGTCAACGTCGACGACCTGCTGGTTTCGCAGCCGGACACCGGCGAACAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCCGTTGACGTGATCATCGTCGACTCCGTGGCCGCCCTGGTACCGAAGGCCGAGATCGAAGGCGAGATGGGTGAC
ATGCACGTGGGTCTGCAGGCGCGCCTGATGTCCCAGGCGCTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTCATCTTCATCAACCAGATCCGTATGAAGATCGGTGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCCC
TGAAGTTCTACGCCTCGGTGCGTCTGGATATTCGCCGTACCGGTGCGGTCAAGGAAGGCGACGAGGTGGTCGGTAGCGAA
ACCCGCGTCAAGATCGTCAAGAACAAGGTTTCGCCGCCATTCCGTCAGGCTGAGTTCCAGATCCTCTACGGCAAGGGTAT
CTACCGTAACGGCGAGATCATTGACCTGGGTGTTTCCCAAGGCCTGGTCGAGAAATCCGGTGCCTGGTACGCCTACCAAG
GCAACAAGATCGGTCAAGGCAAAGCAAACGCCGCGAAGTACCTTGCTGAGAACCCGGCTATTGGCGCCGAGATTGAGAAG
CAGATTCGCGAGAAGCTGCTGACCGCTGGTGCTGTTGCGGCTGCTGGCAAGGCTGCTGCTGCCGAAGCCGATGCCGATGA
CATGGCCGACGCTGACGCCGGCTATTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V7DAG6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

90.751

97.465

0.885
  recA Acinetobacter baylyi ADP1

77.134

92.394

0.713
  recA Acinetobacter baumannii D1279779

75.15

94.085

0.707
  recA Vibrio cholerae strain A1552

70.809

97.465

0.69
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.809

97.465

0.69
  recA Glaesserella parasuis strain SC1401

69.143

98.592

0.682
  recA Ralstonia pseudosolanacearum GMI1000

71.045

94.366

0.67
  recA Neisseria gonorrhoeae MS11

71.296

91.268

0.651
  recA Neisseria gonorrhoeae MS11

71.296

91.268

0.651
  recA Neisseria gonorrhoeae strain FA1090

71.296

91.268

0.651
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.095

94.648

0.597
  recA Helicobacter pylori strain NCTC11637

63.303

92.113

0.583
  recA Helicobacter pylori 26695

62.691

92.113

0.577
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.377

94.085

0.577
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

90.423

0.563
  recA Streptococcus pyogenes NZ131

55.462

100

0.558
  recA Streptococcus mitis SK321

55.65

99.718

0.555
  recA Streptococcus mutans UA159

55.367

99.718

0.552
  recA Streptococcus mitis NCTC 12261

56.196

97.746

0.549
  recA Streptococcus pneumoniae Rx1

58.896

91.831

0.541
  recA Streptococcus pneumoniae D39

58.896

91.831

0.541
  recA Streptococcus pneumoniae R6

58.896

91.831

0.541
  recA Streptococcus pneumoniae TIGR4

58.896

91.831

0.541
  recA Latilactobacillus sakei subsp. sakei 23K

59.19

90.423

0.535
  recA Lactococcus lactis subsp. cremoris KW2

57.276

90.986

0.521
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.828

91.831

0.513

Multiple sequence alignment