Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   M497_RS06310 Genome accession   NZ_CP090409
Coordinates   1301350..1302444 (-) Length   364 a.a.
NCBI ID   WP_003652664.1    Uniprot ID   A0A133PFL3
Organism   Lactobacillus gasseri 2016     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1296350..1307444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M497_RS06290 (M497_06290) - 1296363..1297631 (-) 1269 WP_003652668.1 helicase-related protein -
  M497_RS06295 (M497_06295) - 1297673..1298338 (+) 666 WP_003646987.1 YigZ family protein -
  M497_RS06300 (M497_06300) - 1298357..1299499 (-) 1143 WP_003646986.1 glycosyltransferase family 4 protein -
  M497_RS06305 (M497_06305) rny 1299600..1301222 (-) 1623 WP_003646985.1 ribonuclease Y -
  M497_RS06310 (M497_06310) recA 1301350..1302444 (-) 1095 WP_003652664.1 recombinase RecA Machinery gene
  M497_RS06315 (M497_06315) pgsA 1302607..1303170 (-) 564 WP_003646983.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  M497_RS06320 (M497_06320) - 1303170..1304192 (-) 1023 WP_003646982.1 helix-turn-helix domain-containing protein -
  M497_RS06325 (M497_06325) ymfI 1304251..1304979 (-) 729 WP_003646981.1 elongation factor P 5-aminopentanone reductase -
  M497_RS06330 (M497_06330) - 1304980..1306215 (-) 1236 WP_003652660.1 M16 family metallopeptidase -
  M497_RS06335 (M497_06335) - 1306212..1307426 (-) 1215 WP_003646979.1 M16 family metallopeptidase -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 39318.84 Da        Isoelectric Point: 6.7608

>NTDB_id=642152 M497_RS06310 WP_003652664.1 1301350..1302444(-) (recA) [Lactobacillus gasseri 2016]
MAKDDKKKALDIALKKIEKDFGKGAVMRMGEKVDTQISTIPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAV
AEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLIASGAIDILVVDSVAALVPRAEIDGDMG
DSHVGLQARLMSQALRKLSGNISKTKTIAVFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQGSDVIGN
RVKLKVVKNKVAPPFKVAEVDIMYGKGISQTGELIDMAADKDIIKKAGSWYSYGDDRIGQGRENAKQYLEEHPDVYDEVK
EKVRKAYGIDAKAIEERENPEKIKQEKEAAAAKDDASNEKSKKN

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=642152 M497_RS06310 WP_003652664.1 1301350..1302444(-) (recA) [Lactobacillus gasseri 2016]
TTGGCTAAAGATGATAAAAAGAAGGCCTTAGATATTGCCTTAAAGAAGATTGAAAAAGACTTTGGAAAAGGCGCAGTTAT
GCGTATGGGTGAAAAAGTAGACACTCAAATTTCCACTATTCCTTCCGGTTCACTAGCTTTGGATGCTGCTCTTGGAGTTG
GTGGTTATCCACGTGGACGAATTATTGAAGTATATGGACCAGAAAGTTCTGGTAAAACCACTGTAGCACTTCACGCTGTT
GCAGAAGTCCAAAAACGTGGAGGAACAGCTGCATACATTGATGCTGAAAATGCTATGGATCCAGCTTATGCTGAGGCGTT
AGGTGTAGATATTGATTCATTAATTTTATCTCAACCAAATACTGGTGAAGAAGGTTTGCAAATTGCAGATACTTTGATTG
CCAGTGGTGCAATTGATATTTTGGTTGTGGATTCAGTTGCTGCTTTGGTACCACGGGCTGAAATTGATGGAGATATGGGA
GACTCTCATGTTGGTTTACAGGCAAGATTAATGAGTCAGGCCTTGCGTAAACTTTCTGGAAATATTTCTAAAACGAAGAC
AATTGCTGTTTTCATTAACCAAATTCGTGAAAAAGTTGGTGTTATGTTTGGAAATCCAGAAACTACCCCTGGTGGTCGTG
CTTTAAAGTTCTATTCTACTATTCGATTAGAAGTTCGTCGTGCGGAACAGATCAAGCAAGGATCTGATGTAATTGGTAAC
CGCGTTAAGCTAAAGGTTGTTAAGAACAAGGTTGCTCCACCATTTAAAGTGGCAGAAGTTGATATCATGTACGGTAAAGG
AATTTCTCAAACTGGTGAATTGATTGATATGGCTGCTGACAAGGATATCATTAAGAAAGCTGGTTCTTGGTATTCATATG
GTGATGATCGAATTGGTCAAGGGCGTGAGAATGCTAAGCAGTATCTTGAAGAGCACCCAGATGTGTACGATGAAGTGAAA
GAAAAAGTACGTAAAGCATATGGAATTGATGCTAAAGCTATTGAAGAACGTGAAAACCCCGAAAAAATAAAGCAGGAGAA
GGAAGCAGCAGCCGCAAAAGATGATGCTTCCAATGAGAAAAGCAAAAAAAACTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A133PFL3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

82.067

90.385

0.742
  recA Bacillus subtilis subsp. subtilis str. 168

72.727

90.659

0.659
  recA Streptococcus mutans UA159

65.205

100

0.654
  recA Streptococcus pneumoniae TIGR4

65.651

99.176

0.651
  recA Streptococcus pneumoniae R6

65.651

99.176

0.651
  recA Streptococcus pneumoniae Rx1

65.651

99.176

0.651
  recA Streptococcus pneumoniae D39

65.651

99.176

0.651
  recA Streptococcus mitis NCTC 12261

65

98.901

0.643
  recA Streptococcus pyogenes NZ131

70.517

90.385

0.637
  recA Streptococcus mitis SK321

68.693

90.385

0.621
  recA Lactococcus lactis subsp. cremoris KW2

67.477

90.385

0.61
  recA Neisseria gonorrhoeae strain FA1090

61.562

91.484

0.563
  recA Neisseria gonorrhoeae MS11

61.562

91.484

0.563
  recA Neisseria gonorrhoeae MS11

61.562

91.484

0.563
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.5

90.11

0.563
  recA Acinetobacter baumannii D1279779

57.018

93.956

0.536
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.062

88.736

0.533
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.359

90.385

0.527
  recA Helicobacter pylori 26695

58.589

89.56

0.525
  recA Helicobacter pylori strain NCTC11637

58.589

89.56

0.525
  recA Acinetobacter baylyi ADP1

59.006

88.462

0.522
  recA Vibrio cholerae O1 biovar El Tor strain E7946

53.977

96.703

0.522
  recA Vibrio cholerae strain A1552

53.977

96.703

0.522
  recA Pseudomonas stutzeri DSM 10701

57.321

88.187

0.505
  recA Glaesserella parasuis strain SC1401

55.287

90.934

0.503
  recA Ralstonia pseudosolanacearum GMI1000

57.827

85.989

0.497