Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LY632_RS07055 Genome accession   NZ_CP090370
Coordinates   1436686..1437744 (+) Length   352 a.a.
NCBI ID   WP_234093106.1    Uniprot ID   -
Organism   Erythrobacter sp. SDW2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1431686..1442744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LY632_RS07045 (LY632_07045) - 1433434..1434915 (+) 1482 WP_234093104.1 DUF4139 domain-containing protein -
  LY632_RS07050 (LY632_07050) - 1434927..1436567 (+) 1641 WP_234093105.1 DUF4139 domain-containing protein -
  LY632_RS07055 (LY632_07055) recA 1436686..1437744 (+) 1059 WP_234093106.1 recombinase RecA Machinery gene
  LY632_RS07060 (LY632_07060) - 1437868..1438740 (+) 873 WP_234093107.1 trans-aconitate 2-methyltransferase -
  LY632_RS07065 (LY632_07065) alaS 1438810..1441470 (+) 2661 WP_234093108.1 alanine--tRNA ligase -
  LY632_RS07070 (LY632_07070) - 1441473..1441655 (-) 183 WP_234093110.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37752.21 Da        Isoelectric Point: 5.0797

>NTDB_id=641783 LY632_RS07055 WP_234093106.1 1436686..1437744(+) (recA) [Erythrobacter sp. SDW2]
MAAELKLVDKESNVDRQKALDAALAQIDRAFGKGSAMKLGSKEAMNVEAISTGSLGLDIALGIGGLPKGRVIEVYGPESS
GKTTLALHVIAEAQKNGGTAAFVDAEHALDPVYAKKLGVDIDELIVSQPDTGEQALEITDTLVRSNAIDVLVVDSVAALV
PRAEIEGEMGDSHVGLQARLMSQSLRKLTGSINRSKCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQ
IKDRDEVVGNTTRVKVVKNKVAPPFKQVEFDIMYGEGISKIGEILDLGVKAGVVEKSGSWFSYDSIRIGQGRENAKQFLK
ENTELCDKLEAAIRGKTEEVAGEMMAGPDAED

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=641783 LY632_RS07055 WP_234093106.1 1436686..1437744(+) (recA) [Erythrobacter sp. SDW2]
ATGGCGGCGGAACTGAAACTGGTAGACAAGGAATCCAACGTGGACCGTCAGAAGGCGCTTGACGCAGCACTCGCCCAGAT
CGACCGCGCCTTCGGCAAGGGGTCGGCGATGAAGCTGGGCTCGAAGGAAGCGATGAATGTCGAGGCGATCTCCACCGGCT
CTTTGGGGCTCGATATCGCCCTTGGTATCGGCGGTCTGCCCAAGGGGCGCGTGATCGAAGTCTATGGTCCGGAAAGCTCG
GGCAAGACCACGCTGGCACTGCATGTCATTGCCGAAGCGCAGAAGAACGGCGGCACTGCCGCTTTCGTCGATGCCGAACA
CGCGCTCGACCCGGTCTATGCCAAGAAGCTCGGTGTCGACATCGACGAGCTGATCGTATCGCAGCCCGACACTGGCGAGC
AGGCACTCGAGATTACCGATACGCTGGTGCGCTCCAATGCGATCGACGTGCTGGTGGTCGATTCGGTCGCCGCGCTGGTG
CCGCGCGCCGAAATCGAAGGCGAGATGGGCGACAGCCATGTCGGCCTGCAGGCCCGCCTCATGAGCCAGTCGCTGCGCAA
GCTGACCGGCTCGATCAACCGTTCGAAGTGCATGGTGATCTTCATCAACCAGCTGCGCATGAAGATCGGGGTGATGTACG
GCAATCCGGAAACCACCACCGGCGGCAATGCGCTCAAGTTCTACGCTTCGGTCCGGCTCGACATCCGCCGCACCGGCCAG
ATCAAGGATCGCGACGAAGTCGTCGGCAACACCACCCGCGTTAAGGTGGTGAAGAACAAGGTCGCCCCCCCGTTCAAGCA
GGTCGAATTCGACATCATGTATGGCGAGGGGATCTCAAAGATCGGCGAAATCCTGGACCTTGGCGTCAAGGCCGGGGTGG
TCGAAAAGTCGGGCAGCTGGTTCAGCTATGACAGCATCCGCATCGGCCAGGGCCGCGAAAACGCCAAGCAGTTTCTGAAG
GAAAATACCGAACTTTGCGACAAGCTCGAAGCCGCCATTCGCGGCAAAACCGAGGAGGTCGCCGGGGAGATGATGGCTGG
TCCTGACGCGGAGGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

68.639

96.023

0.659
  recA Vibrio cholerae strain A1552

67.761

95.17

0.645
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.761

95.17

0.645
  recA Neisseria gonorrhoeae MS11

69.782

91.193

0.636
  recA Neisseria gonorrhoeae strain FA1090

69.782

91.193

0.636
  recA Neisseria gonorrhoeae MS11

69.782

91.193

0.636
  recA Glaesserella parasuis strain SC1401

69.906

90.625

0.634
  recA Bacillus subtilis subsp. subtilis str. 168

69.375

90.909

0.631
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.566

94.318

0.628
  recA Acinetobacter baylyi ADP1

65.075

95.17

0.619
  recA Ralstonia pseudosolanacearum GMI1000

70.455

87.5

0.616
  recA Helicobacter pylori strain NCTC11637

64.012

96.307

0.616
  recA Helicobacter pylori 26695

63.717

96.307

0.614
  recA Acinetobacter baumannii D1279779

67.5

90.909

0.614
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.732

91.193

0.599
  recA Streptococcus pneumoniae R6

59.659

100

0.597
  recA Streptococcus pneumoniae Rx1

59.659

100

0.597
  recA Streptococcus pneumoniae D39

59.659

100

0.597
  recA Streptococcus pneumoniae TIGR4

59.659

100

0.597
  recA Streptococcus mitis NCTC 12261

59.654

98.58

0.588
  recA Streptococcus pyogenes NZ131

60.058

97.443

0.585
  recA Latilactobacillus sakei subsp. sakei 23K

63.438

90.909

0.577
  recA Streptococcus mitis SK321

60.597

95.17

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.615

92.33

0.56
  recA Streptococcus mutans UA159

60.802

92.045

0.56
  recA Lactococcus lactis subsp. cremoris KW2

59.215

94.034

0.557