Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LY257_RS06795 Genome accession   NZ_CP090367
Coordinates   1394508..1395551 (-) Length   347 a.a.
NCBI ID   WP_000952105.1    Uniprot ID   A0A1V3AUB5
Organism   Helicobacter pylori strain CCUG 17875     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1389508..1400551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LY257_RS06765 (LY257_06720) - 1389750..1390868 (+) 1119 WP_000022380.1 glycosyltransferase family 8 protein -
  LY257_RS06770 (LY257_06725) - 1390865..1391821 (-) 957 WP_000952278.1 PDC sensor domain-containing protein -
  LY257_RS06775 (LY257_06730) - 1391843..1392331 (-) 489 WP_001164281.1 shikimate kinase -
  LY257_RS06780 (LY257_06735) - 1392336..1392932 (-) 597 WP_001864026.1 AMIN domain-containing protein -
  LY257_RS06785 (LY257_06740) - 1392949..1393224 (-) 276 WP_000146210.1 hypothetical protein -
  LY257_RS06790 (LY257_06745) eno 1393217..1394497 (-) 1281 WP_000955590.1 phosphopyruvate hydratase -
  LY257_RS06795 (LY257_06750) recA 1394508..1395551 (-) 1044 WP_000952105.1 recombinase RecA Machinery gene
  LY257_RS06800 (LY257_06755) - 1395649..1396512 (+) 864 WP_000626302.1 menaquinone biosynthesis family protein -
  LY257_RS06805 (LY257_06760) - 1396509..1397276 (-) 768 WP_000506360.1 hypothetical protein -
  LY257_RS06810 (LY257_06765) - 1397365..1397946 (-) 582 WP_000660366.1 hypothetical protein -
  LY257_RS06815 (LY257_06770) - 1397959..1398543 (-) 585 WP_001222026.1 hypothetical protein -
  LY257_RS06820 (LY257_06775) - 1398644..1398850 (-) 207 WP_000670506.1 DUF4006 family protein -
  LY257_RS06825 (LY257_06780) ccoP 1398861..1399739 (-) 879 WP_000346815.1 cytochrome-c oxidase, cbb3-type subunit III -
  LY257_RS06830 (LY257_06785) - 1399741..1399959 (-) 219 WP_001864022.1 cytochrome c oxidase, cbb3-type, CcoQ subunit -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37652.42 Da        Isoelectric Point: 5.9526

>NTDB_id=641757 LY257_RS06795 WP_000952105.1 1394508..1395551(-) (recA) [Helicobacter pylori strain CCUG 17875]
MAIDEDKQKAISLAIKQIDKVFGKGALVRLGDKQVEKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHI
IAECQKNGGVCAFIDAEHALDVHYAKRLGVDTQNLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM
GDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHI
GNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKEDKALANE
ITLKIKESIGSNEEIMPLPDEPLEEME

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=641757 LY257_RS06795 WP_000952105.1 1394508..1395551(-) (recA) [Helicobacter pylori strain CCUG 17875]
ATGGCAATAGATGAAGACAAACAAAAAGCGATTTCTTTAGCGATCAAACAAATTGATAAGGTTTTTGGTAAGGGGGCGTT
GGTGCGCCTTGGGGATAAGCAAGTAGAAAAGATTGACGCTATTTCTACAGGCTCGTTAGGGTTGGATCTGGCTTTAGGGA
TTGGGGGCGTTCCAAAGGGCAGGATCATTGAAATTTATGGGCCAGAGTCAAGCGGGAAGACCACTTTAAGCTTGCATATT
ATTGCAGAATGCCAAAAAAATGGCGGTGTGTGCGCGTTCATTGACGCTGAGCATGCCCTAGATGTGCATTATGCTAAGAG
ATTGGGCGTGGATACGCAAAATCTACTCGTTTCCCAACCTGATACAGGCGAGCAAGCTTTAGAAATTTTAGAAACGATCA
CCAGAAGCGGAGGGATTGATTTAGTGGTGGTGGATTCGGTGGCGGCCCTTACGCCTAAAGCAGAGATTGATGGGGATATG
GGCGATCAGCATGTGGGCTTGCAAGCAAGGCTTATGAGCCATGCGTTAAGAAAAATCACCGGTGTTTTGCACAAGATGAA
CACTACTCTCATTTTTATCAATCAAATCAGGATGAAGATTGGCATGATGGGTTATGGGAGTCCAGAGACCACAACCGGGG
GTAATGCCTTAAAATTCTATGCGAGCGTTAGGATTGATATTAGAAGAATCGCCGCTTTAAAACAAAACGAACAGCATATT
GGCAATAGGGCTAAAGCTAAAGTGGTTAAAAATAAAGTCGCTCCGCCTTTTAGAGAAGCGGAATTTGACATCATGTTTGG
GGAAGGGATTTCTAAAGAGGGCGAAATTATTGATTATGGCGTGAAATTAGACATTGTGGATAAGAGCGGGGCATGGCTTA
GCTACCAGGATAAAAAGCTAGGGCAAGGCCGAGAAAACGCTAAAGCCCTACTGAAAGAAGATAAAGCCCTAGCGAATGAA
ATCACTCTTAAGATTAAAGAGAGTATTGGCTCTAATGAAGAGATCATGCCCTTACCCGATGAGCCTTTAGAAGAAATGGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V3AUB5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori strain NCTC11637

99.424

100

0.994
  recA Helicobacter pylori 26695

98.847

100

0.988
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

78.659

94.524

0.744
  recA Neisseria gonorrhoeae MS11

66.154

93.66

0.62
  recA Neisseria gonorrhoeae MS11

66.154

93.66

0.62
  recA Neisseria gonorrhoeae strain FA1090

66.154

93.66

0.62
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.157

95.677

0.614
  recA Bacillus subtilis subsp. subtilis str. 168

64.923

93.66

0.608
  recA Acinetobacter baumannii D1279779

64.22

94.236

0.605
  recA Acinetobacter baylyi ADP1

63.914

94.236

0.602
  recA Ralstonia pseudosolanacearum GMI1000

61.905

96.83

0.599
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.31

96.83

0.594
  recA Vibrio cholerae strain A1552

61.31

96.83

0.594
  recA Pseudomonas stutzeri DSM 10701

60.234

98.559

0.594
  recA Glaesserella parasuis strain SC1401

60.366

94.524

0.571
  recA Streptococcus pneumoniae Rx1

55.84

100

0.565
  recA Streptococcus pneumoniae D39

55.84

100

0.565
  recA Streptococcus pneumoniae R6

55.84

100

0.565
  recA Streptococcus pneumoniae TIGR4

55.84

100

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

54.622

100

0.562
  recA Streptococcus pyogenes NZ131

57.576

95.101

0.548
  recA Lactococcus lactis subsp. cremoris KW2

57.751

94.813

0.548
  recA Streptococcus mitis SK321

57.447

94.813

0.545
  recA Streptococcus mitis NCTC 12261

57.447

94.813

0.545
  recA Streptococcus mutans UA159

55.988

96.254

0.539
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.442

93.948

0.53