Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LN341_RS02635 Genome accession   NZ_CP090364
Coordinates   537275..538339 (+) Length   354 a.a.
NCBI ID   WP_046222297.1    Uniprot ID   A0A0F5V9T0
Organism   Photobacterium sp. TLY01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 532275..543339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LN341_RS02620 (LN341_02620) rpoS 532776..533783 (+) 1008 WP_046222294.1 RNA polymerase sigma factor RpoS -
  LN341_RS02625 (LN341_02625) mutS 533925..536462 (-) 2538 WP_370643726.1 DNA mismatch repair protein MutS -
  LN341_RS02630 (LN341_02630) pncC 536658..537146 (+) 489 WP_046222296.1 nicotinamide-nucleotide amidase -
  LN341_RS02635 (LN341_02635) recA 537275..538339 (+) 1065 WP_046222297.1 recombinase RecA Machinery gene
  LN341_RS02640 (LN341_02640) recX 538525..538986 (+) 462 WP_234203984.1 recombination regulator RecX -
  LN341_RS02645 (LN341_02645) alaS 539173..541797 (+) 2625 WP_234203985.1 alanine--tRNA ligase -
  LN341_RS02650 (LN341_02650) csrA 542126..542323 (+) 198 WP_027253546.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38074.51 Da        Isoelectric Point: 4.8500

>NTDB_id=641694 LN341_RS02635 WP_046222297.1 537275..538339(+) (recA) [Photobacterium sp. TLY01]
MDDNKQKALAAALGQIEKQFGKGSIMKLGDNRTMDIETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLETIA
AAQRKGKTCAFIDAEHALDPIYAKKLGVDIDQLLVSQPDTGEQALEICDALARSGAVDMIVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKQADTQILYGQGFNRNGELIDLGVKQKLIEKAGAWYSYKGDKIGQGKANACKYLTENPEIAQIIDQ
QLREQLLNPANVSEADAELVSADTDAVDAQDEAF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=641694 LN341_RS02635 WP_046222297.1 537275..538339(+) (recA) [Photobacterium sp. TLY01]
ATGGACGACAACAAACAGAAGGCTCTTGCCGCTGCCCTGGGTCAGATCGAAAAGCAGTTCGGTAAAGGCTCCATTATGAA
GCTGGGTGATAACCGTACGATGGATATTGAAACCATCTCAACCGGTTCCCTGTCTCTGGATATCGCACTGGGTGCCGGCG
GCCTGCCAATGGGTCGTATCGTCGAAATTTATGGTCCGGAATCGTCAGGTAAAACAACCCTGACGCTGGAAACTATTGCT
GCCGCACAGCGTAAGGGCAAAACCTGCGCCTTTATCGATGCTGAGCACGCACTGGATCCGATTTATGCCAAGAAGCTGGG
TGTGGATATTGATCAGTTGCTGGTGTCACAGCCGGATACCGGCGAGCAGGCACTGGAAATCTGTGATGCGCTGGCCCGTT
CCGGTGCTGTCGATATGATCGTGGTCGACTCCGTTGCCGCCCTGACCCCGAAAGCCGAAATTGAAGGCGAAATGGGTGAT
TCGCACATGGGCTTGCAGGCGCGTATGCTGTCCCAGGCGATGCGTAAACTGACGGGTAACCTGAAACAGTCTAACTGTAT
GTGTATCTTCATCAACCAGATCCGTATGAAGATCGGTGTGATGTTCGGTAACCCGGAAACGACCACTGGTGGTAATGCCC
TGAAATTCTATGCCTCCGTTCGTCTGGATATCCGCCGTACCGGTGCGATTAAAGAAGGTGACGAAGTGGTGGGTAACGAA
ACCCGCATTAAAGTGGTCAAGAACAAGATCGCCGCACCGTTTAAACAAGCGGATACGCAAATCCTGTACGGACAAGGTTT
CAACCGTAATGGTGAGCTGATTGACTTGGGCGTGAAGCAAAAACTGATCGAAAAAGCGGGCGCCTGGTACAGCTATAAAG
GCGACAAGATTGGTCAGGGTAAAGCCAACGCGTGTAAGTACCTGACTGAAAATCCTGAAATCGCTCAGATTATTGATCAG
CAATTGCGAGAGCAACTGCTGAACCCGGCCAATGTGTCAGAAGCCGATGCTGAGCTGGTCAGTGCCGATACTGATGCAGT
TGATGCTCAGGATGAGGCTTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F5V9T0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

87.644

98.305

0.862
  recA Vibrio cholerae O1 biovar El Tor strain E7946

87.644

98.305

0.862
  recA Pseudomonas stutzeri DSM 10701

74.499

98.588

0.734
  recA Acinetobacter baylyi ADP1

74.32

93.503

0.695
  recA Acinetobacter baumannii D1279779

74.618

92.373

0.689
  recA Glaesserella parasuis strain SC1401

68.091

99.153

0.675
  recA Neisseria gonorrhoeae MS11

69.753

91.525

0.638
  recA Neisseria gonorrhoeae MS11

69.753

91.525

0.638
  recA Neisseria gonorrhoeae strain FA1090

69.753

91.525

0.638
  recA Ralstonia pseudosolanacearum GMI1000

70.74

87.853

0.621
  recA Streptococcus pneumoniae R6

61.176

96.045

0.588
  recA Streptococcus pneumoniae Rx1

61.176

96.045

0.588
  recA Streptococcus pneumoniae D39

61.176

96.045

0.588
  recA Streptococcus pneumoniae TIGR4

61.176

96.045

0.588
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.997

92.373

0.582
  recA Bacillus subtilis subsp. subtilis str. 168

62.733

90.96

0.571
  recA Streptococcus mitis NCTC 12261

61.963

92.09

0.571
  recA Streptococcus mutans UA159

59.763

95.48

0.571
  recA Streptococcus mitis SK321

61.656

92.09

0.568
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.423

93.503

0.565
  recA Helicobacter pylori strain NCTC11637

59.939

92.373

0.554
  recA Streptococcus pyogenes NZ131

60

91.808

0.551
  recA Helicobacter pylori 26695

59.633

92.373

0.551
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.185

91.525

0.551
  recA Latilactobacillus sakei subsp. sakei 23K

59.813

90.678

0.542
  recA Lactococcus lactis subsp. cremoris KW2

58.824

91.243

0.537