Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LVR30_RS01170 Genome accession   NZ_CP090356
Coordinates   252820..253890 (-) Length   356 a.a.
NCBI ID   WP_014594423.1    Uniprot ID   A0AAJ3YHV4
Organism   Pantoea ananatis strain JBR-LB3-16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 247820..258890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVR30_RS01155 (LVR30_01155) csrA 248999..249184 (-) 186 WP_006120718.1 carbon storage regulator CsrA -
  LVR30_RS01160 (LVR30_01160) alaS 249435..252062 (-) 2628 WP_022623092.1 alanine--tRNA ligase -
  LVR30_RS01165 (LVR30_01165) - 252194..252706 (-) 513 WP_014594422.1 regulatory protein RecX -
  LVR30_RS01170 (LVR30_01170) recA 252820..253890 (-) 1071 WP_014594423.1 recombinase RecA Machinery gene
  LVR30_RS01175 (LVR30_01175) pncC 253986..254480 (-) 495 WP_013026906.1 nicotinamide-nucleotide amidase -
  LVR30_RS01180 (LVR30_01180) tam 254581..255357 (-) 777 WP_210456253.1 trans-aconitate 2-methyltransferase -
  LVR30_RS01185 (LVR30_01185) - 255541..255876 (-) 336 WP_014605175.1 zinc ribbon domain-containing protein YjdM -
  LVR30_RS01190 (LVR30_01190) mltB 255952..257034 (-) 1083 WP_013026909.1 lytic murein transglycosylase B -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 37934.47 Da        Isoelectric Point: 5.0465

>NTDB_id=641662 LVR30_RS01170 WP_014594423.1 252820..253890(-) (recA) [Pantoea ananatis strain JBR-LB3-16]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPEASGKTTLTLQV
IAAAQRKGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQIMYGEGINTFGELVDLGVKHKLIEKAGAWYSYKGDKIGQGKANAGNFLKENAAVADEL
DIKLREMLLNGGDQNIAADVAGNDVEKAASEANEDY

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=641662 LVR30_RS01170 WP_014594423.1 252820..253890(-) (recA) [Pantoea ananatis strain JBR-LB3-16]
ATGGCAATTGATGAAAACAAACAGAAGGCTTTAGCTGCCGCACTCGGCCAGATTGAGAAGCAATTTGGTAAAGGCTCCAT
CATGCGCTTGGGTGAAGACCGCTCAATGGATGTGGAAACCATTTCAACGGGTTCTCTGTCACTGGATATCGCATTAGGTG
CGGGTGGTTTACCGATGGGACGTATCGTTGAGATCTACGGCCCAGAGGCCTCAGGTAAAACGACACTGACACTTCAGGTT
ATTGCCGCCGCGCAGCGTAAGGGCAAAACCTGTGCCTTTATCGATGCCGAGCACGCACTGGATCCCATCTATGCTAAGAA
ACTGGGCGTAGATATCGACAATCTGCTGTGTTCACAGCCGGATACCGGTGAGCAGGCCCTGGAAATTTGTGATGCGCTGG
CCCGCTCTGGTGCCGTTGACGTCATTATCGTTGACTCCGTAGCTGCACTGACGCCAAAAGCCGAAATCGAAGGTGAAATC
GGTGACTCACATATGGGCCTGGCGGCACGTATGATGAGCCAGGCAATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCTAA
TACGCTGCTGATCTTCATCAACCAGATTCGTATGAAGATTGGTGTGATGTTCGGTAACCCGGAAACCACTACCGGTGGTA
ACGCGCTGAAGTTCTACGCTTCTGTTCGCCTTGATATTCGCCGTATCGGTGCGATTAAAGAGGGTGACAACGTGGTGGGT
AGTGAAACGCGCGTTAAAGTCGTTAAGAACAAAATTGCAGCACCATTTAAACAGGCTGAGTTCCAGATCATGTACGGCGA
AGGCATTAACACCTTCGGTGAGCTGGTGGATCTTGGCGTGAAGCACAAGCTGATTGAAAAAGCCGGTGCATGGTACAGCT
ATAAAGGCGATAAGATCGGTCAGGGCAAGGCAAACGCGGGCAACTTCCTCAAAGAAAATGCCGCGGTGGCCGACGAGCTT
GATATCAAACTGCGTGAAATGCTGCTTAACGGTGGCGATCAAAACATCGCGGCGGACGTTGCAGGCAACGACGTTGAGAA
GGCGGCGAGCGAAGCCAACGAAGATTATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

82.235

98.034

0.806
  recA Vibrio cholerae O1 biovar El Tor strain E7946

82.235

98.034

0.806
  recA Pseudomonas stutzeri DSM 10701

71.47

97.472

0.697
  recA Acinetobacter baylyi ADP1

71.006

94.944

0.674
  recA Acinetobacter baumannii D1279779

72.424

92.697

0.671
  recA Glaesserella parasuis strain SC1401

67.236

98.596

0.663
  recA Neisseria gonorrhoeae MS11

66.369

94.382

0.626
  recA Neisseria gonorrhoeae MS11

66.369

94.382

0.626
  recA Neisseria gonorrhoeae strain FA1090

66.369

94.382

0.626
  recA Ralstonia pseudosolanacearum GMI1000

69.775

87.36

0.61
  recA Helicobacter pylori strain NCTC11637

62.691

91.854

0.576
  recA Helicobacter pylori 26695

62.385

91.854

0.573
  recA Lactococcus lactis subsp. cremoris KW2

62.539

90.73

0.567
  recA Streptococcus mitis NCTC 12261

62.229

90.73

0.565
  recA Streptococcus mitis SK321

62.229

90.73

0.565
  recA Streptococcus pneumoniae D39

61.92

90.73

0.562
  recA Streptococcus pneumoniae R6

61.92

90.73

0.562
  recA Streptococcus pneumoniae TIGR4

61.92

90.73

0.562
  recA Streptococcus pneumoniae Rx1

61.92

90.73

0.562
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.696

89.607

0.562
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

91.292

0.562
  recA Streptococcus mutans UA159

61.231

91.292

0.559
  recA Streptococcus pyogenes NZ131

61.231

91.292

0.559
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

90.169

0.559
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.337

93.258

0.553
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.306

89.045

0.528