Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LZU96_RS04850 Genome accession   NZ_CP090207
Coordinates   1004457..1005527 (+) Length   356 a.a.
NCBI ID   WP_094121087.1    Uniprot ID   -
Organism   Pantoea agglomerans strain HJS002     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 999457..1010527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZU96_RS04820 (LZU96_04820) narI 999572..1000249 (+) 678 WP_233987295.1 respiratory nitrate reductase subunit gamma -
  LZU96_RS04825 (LZU96_04825) mltB 1000397..1001479 (+) 1083 WP_233987296.1 lytic murein transglycosylase B -
  LZU96_RS04830 (LZU96_04830) - 1001560..1001895 (+) 336 WP_233987297.1 zinc ribbon domain-containing protein YjdM -
  LZU96_RS04835 (LZU96_04835) - 1001930..1002817 (-) 888 WP_233987298.1 dihydrodipicolinate synthase family protein -
  LZU96_RS04840 (LZU96_04840) tam 1002984..1003760 (+) 777 WP_233987299.1 trans-aconitate 2-methyltransferase -
  LZU96_RS04845 (LZU96_04845) pncC 1003866..1004360 (+) 495 WP_233987300.1 nicotinamide-nucleotide amidase -
  LZU96_RS04850 (LZU96_04850) recA 1004457..1005527 (+) 1071 WP_094121087.1 recombinase RecA Machinery gene
  LZU96_RS04855 (LZU96_04855) - 1005654..1006172 (+) 519 WP_233987301.1 regulatory protein RecX -
  LZU96_RS04860 (LZU96_04860) alaS 1006306..1008933 (+) 2628 WP_233987302.1 alanine--tRNA ligase -
  LZU96_RS04865 (LZU96_04865) csrA 1009184..1009369 (+) 186 WP_008927091.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38043.52 Da        Isoelectric Point: 5.0504

>NTDB_id=641195 LZU96_RS04850 WP_094121087.1 1004457..1005527(+) (recA) [Pantoea agglomerans strain HJS002]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IASAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQIMYGEGINTFGELVDLGVKHKLIEKAGAWYSYNGDKIGQGKSNAGNFLKENAAVANEI
DMKLREMLLNGADDKLAAEQSADKVENAASEANEDF

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=641195 LZU96_RS04850 WP_094121087.1 1004457..1005527(+) (recA) [Pantoea agglomerans strain HJS002]
ATGGCGATTGATGAAAACAAACAAAAGGCTTTAGCTGCCGCGCTGGGCCAGATTGAGAAGCAATTTGGTAAAGGCTCCAT
CATGCGCTTGGGTGAAGACCGCTCAATGGATGTGGAAACCATCTCTACCGGTTCGCTGTCACTGGATATTGCATTAGGTG
CAGGCGGTCTGCCAATGGGCCGTATCGTTGAGATTTACGGACCCGAGTCTTCAGGTAAAACCACGCTGACCCTGCAGGTG
ATTGCGTCGGCACAGCGTAAAGGCAAAACCTGTGCCTTTATCGATGCGGAACATGCGCTGGACCCGGTTTACGCCAAGAA
ACTGGGCGTAGACATCGACAACCTGCTCTGTTCACAGCCCGATACCGGTGAGCAGGCGCTGGAGATTTGTGATGCGCTGG
CACGTTCAGGCGCGGTTGACGTCATCATCGTTGACTCCGTGGCGGCCCTGACGCCGAAAGCGGAAATCGAAGGTGAAATC
GGTGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCCGGTAACCTGAAACAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTTGGTAACCCGGAAACCACCACCGGGGGTA
ACGCGCTGAAGTTCTACGCCTCTGTCCGTCTTGATATCCGCCGTATCGGTGCCATCAAAGAGGGCGATAACGTAGTCGGC
AGTGAGACCCGCGTTAAAGTGGTGAAAAACAAAATCGCCGCGCCATTCAAACAGGCTGAGTTCCAGATCATGTACGGCGA
AGGTATCAACACCTTCGGCGAGCTGGTCGACCTGGGCGTGAAGCACAAGCTGATTGAAAAAGCGGGTGCATGGTACAGCT
ACAATGGCGATAAGATTGGTCAGGGTAAATCGAATGCCGGCAACTTCCTGAAAGAGAATGCGGCTGTGGCAAACGAAATC
GATATGAAGTTACGTGAGATGCTACTGAACGGCGCTGACGATAAACTGGCAGCAGAGCAGTCTGCTGACAAAGTGGAAAA
CGCAGCGAGCGAAGCGAACGAAGACTTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

83.095

98.034

0.815
  recA Vibrio cholerae O1 biovar El Tor strain E7946

83.095

98.034

0.815
  recA Acinetobacter baumannii D1279779

72.754

93.82

0.683
  recA Pseudomonas stutzeri DSM 10701

74.006

91.854

0.68
  recA Acinetobacter baylyi ADP1

70.76

96.067

0.68
  recA Glaesserella parasuis strain SC1401

67.806

98.596

0.669
  recA Neisseria gonorrhoeae MS11

67.771

93.258

0.632
  recA Neisseria gonorrhoeae MS11

67.771

93.258

0.632
  recA Neisseria gonorrhoeae strain FA1090

67.771

93.258

0.632
  recA Ralstonia pseudosolanacearum GMI1000

70.74

87.36

0.618
  recA Streptococcus mitis SK321

60.58

96.91

0.587
  recA Streptococcus mitis NCTC 12261

58.146

100

0.581
  recA Helicobacter pylori strain NCTC11637

62.997

91.854

0.579
  recA Helicobacter pylori 26695

62.691

91.854

0.576
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.059

94.944

0.57
  recA Lactococcus lactis subsp. cremoris KW2

62.848

90.73

0.57
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

90.169

0.567
  recA Streptococcus pyogenes NZ131

61.846

91.292

0.565
  recA Streptococcus mutans UA159

61.846

91.292

0.565
  recA Streptococcus pneumoniae TIGR4

61.92

90.73

0.562
  recA Streptococcus pneumoniae Rx1

61.92

90.73

0.562
  recA Streptococcus pneumoniae D39

61.92

90.73

0.562
  recA Streptococcus pneumoniae R6

61.92

90.73

0.562
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

91.292

0.562
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.337

93.258

0.553
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.252

89.045

0.537