Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LXN10_RS05685 Genome accession   NZ_CP090177
Coordinates   1117448..1118488 (+) Length   346 a.a.
NCBI ID   WP_375724917.1    Uniprot ID   -
Organism   Arcobacter sp. KX21116     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1112448..1123488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXN10_RS05665 (LXN10_05650) gmd 1113461..1114582 (-) 1122 WP_375724914.1 GDP-mannose 4,6-dehydratase -
  LXN10_RS05670 (LXN10_05655) - 1114617..1116041 (-) 1425 WP_375724915.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  LXN10_RS05675 (LXN10_05660) pseB 1116053..1117045 (-) 993 WP_375724916.1 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) -
  LXN10_RS05680 (LXN10_05665) - 1117150..1117362 (+) 213 WP_129100859.1 hypothetical protein -
  LXN10_RS05685 (LXN10_05670) recA 1117448..1118488 (+) 1041 WP_375724917.1 recombinase RecA Machinery gene
  LXN10_RS05690 (LXN10_05675) eno 1118640..1119917 (+) 1278 WP_375724918.1 phosphopyruvate hydratase -
  LXN10_RS05695 (LXN10_05680) - 1119930..1120187 (+) 258 WP_129100856.1 septum formation initiator -
  LXN10_RS05700 (LXN10_05685) - 1120184..1120993 (+) 810 WP_375724919.1 AMIN domain-containing protein -
  LXN10_RS05705 (LXN10_05690) - 1120967..1122124 (-) 1158 WP_375724920.1 cation:proton antiporter -
  LXN10_RS05710 (LXN10_05695) - 1122139..1122990 (-) 852 WP_375724921.1 biotin synthase -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37406.82 Da        Isoelectric Point: 4.7490

>NTDB_id=640946 LXN10_RS05685 WP_375724917.1 1117448..1118488(+) (recA) [Arcobacter sp. KX21116]
MDDNQKKSLELAIKQIDKAFGKGSLVRLGDKETVPVESISTGSLGLDLALGVGGLPKGRVIEIYGPESSGKTTLTLHAIA
ECQRQGGVCAFIDAEHALDVIYAKNLGVDTDNLLVSQPDFGEQALEILETVIRSGAVDLIVIDSVAALTPKVEIDGDMDD
QQVGVQARLMSKALRKITGILHKMNCTVIFINQIRMKIGMTGYGSPETTTGGNALKFYSSIRLDIRRIATLKQAENSIGN
RVKVKVVKNKVAPPFKQAEFDIMFGEGISKMGELVDYGVKLDIVDKAGAWFSYNDSKIGQGKENSKVFLRENPEIAKEIE
AKILEAMGVNDAVPFDGDESSEEGED

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=640946 LXN10_RS05685 WP_375724917.1 1117448..1118488(+) (recA) [Arcobacter sp. KX21116]
ATGGATGATAATCAAAAAAAATCACTAGAATTAGCAATTAAACAAATTGACAAAGCTTTTGGAAAAGGTTCACTAGTAAG
ATTAGGGGATAAAGAAACAGTTCCAGTTGAGTCTATAAGTACAGGTTCATTGGGACTTGACTTAGCATTAGGGGTTGGAG
GATTACCAAAGGGAAGAGTAATAGAGATATATGGACCTGAATCTTCAGGTAAAACTACACTTACTCTTCATGCAATAGCA
GAGTGTCAAAGACAAGGTGGAGTTTGTGCTTTTATTGATGCAGAACATGCACTTGATGTTATTTATGCTAAAAACTTAGG
TGTTGATACAGATAACTTACTTGTTTCACAACCAGATTTTGGAGAACAAGCATTAGAAATACTTGAAACAGTTATTAGAA
GTGGAGCTGTAGATTTAATAGTAATTGACTCAGTTGCAGCACTTACTCCAAAAGTAGAGATTGATGGTGATATGGATGAT
CAACAAGTGGGTGTTCAAGCTAGACTTATGAGTAAAGCTTTAAGAAAAATTACTGGTATTTTACATAAAATGAACTGTAC
TGTAATATTTATTAACCAAATCAGAATGAAAATTGGAATGACAGGATATGGAAGTCCAGAAACTACAACTGGTGGAAATG
CACTTAAATTTTACTCTTCTATTAGACTTGATATTAGAAGAATTGCTACACTTAAACAAGCTGAAAACTCTATAGGAAAT
AGAGTAAAAGTAAAAGTTGTAAAAAATAAAGTTGCGCCTCCTTTCAAACAAGCAGAGTTTGATATCATGTTTGGAGAAGG
TATCTCAAAAATGGGAGAACTTGTTGATTATGGTGTTAAACTTGATATTGTAGATAAAGCTGGAGCTTGGTTTAGCTACA
ATGACAGTAAAATCGGTCAAGGGAAAGAGAACTCAAAAGTATTCTTAAGAGAAAACCCAGAAATAGCAAAAGAGATTGAA
GCTAAAATACTTGAAGCTATGGGAGTAAATGATGCTGTACCATTTGATGGCGATGAAAGTTCAGAAGAAGGTGAAGATTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

75.51

99.133

0.749
  recA Helicobacter pylori 26695

74.783

99.711

0.746
  recA Helicobacter pylori strain NCTC11637

74.493

99.711

0.743
  recA Acinetobacter baumannii D1279779

64.327

98.844

0.636
  recA Neisseria gonorrhoeae MS11

62.428

100

0.624
  recA Neisseria gonorrhoeae MS11

62.428

100

0.624
  recA Neisseria gonorrhoeae strain FA1090

62.428

100

0.624
  recA Acinetobacter baylyi ADP1

66.055

94.509

0.624
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.063

96.243

0.607
  recA Pseudomonas stutzeri DSM 10701

62.952

95.954

0.604
  recA Ralstonia pseudosolanacearum GMI1000

66.032

91.04

0.601
  recA Vibrio cholerae strain A1552

62.997

94.509

0.595
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.997

94.509

0.595
  recA Glaesserella parasuis strain SC1401

62.5

94.798

0.592
  recA Bacillus subtilis subsp. subtilis str. 168

60.121

95.665

0.575
  recA Streptococcus pneumoniae TIGR4

57.143

99.133

0.566
  recA Streptococcus pneumoniae Rx1

57.143

99.133

0.566
  recA Streptococcus pneumoniae D39

57.143

99.133

0.566
  recA Streptococcus pneumoniae R6

57.143

99.133

0.566
  recA Streptococcus mutans UA159

56.196

100

0.564
  recA Streptococcus mitis NCTC 12261

56.358

100

0.564
  recA Streptococcus mitis SK321

56.069

100

0.561
  recA Lactococcus lactis subsp. cremoris KW2

58.055

95.087

0.552
  recA Streptococcus pyogenes NZ131

58.462

93.931

0.549
  recA Latilactobacillus sakei subsp. sakei 23K

56.325

95.954

0.54
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.099

93.642

0.535