Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LXF01_RS09655 Genome accession   NZ_CP090067
Coordinates   1941571..1942614 (+) Length   347 a.a.
NCBI ID   WP_078188713.1    Uniprot ID   -
Organism   Acinetobacter sp. SH20PTE14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1936571..1947614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXF01_RS09630 (LXF01_09630) - 1938081..1938524 (+) 444 WP_078193520.1 hypothetical protein -
  LXF01_RS09635 (LXF01_09635) - 1938613..1939356 (-) 744 WP_078188709.1 histidine phosphatase family protein -
  LXF01_RS09640 (LXF01_09640) - 1939426..1940277 (-) 852 WP_233944227.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  LXF01_RS09645 (LXF01_09645) - 1940291..1940992 (+) 702 WP_233944228.1 HAD-IA family hydrolase -
  LXF01_RS09650 (LXF01_09650) - 1940985..1941425 (+) 441 WP_168377604.1 S4 domain-containing protein -
  LXF01_RS09655 (LXF01_09655) recA 1941571..1942614 (+) 1044 WP_078188713.1 recombinase RecA Machinery gene
  LXF01_RS09660 (LXF01_09660) - 1942696..1943340 (+) 645 WP_180117406.1 regulatory protein RecX -
  LXF01_RS09670 (LXF01_09670) - 1943836..1944697 (+) 862 Protein_1866 YbgF trimerization domain-containing protein -
  LXF01_RS09675 (LXF01_09675) lpxA 1944757..1945545 (-) 789 WP_111883752.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  LXF01_RS09680 (LXF01_09680) fabZ 1945542..1946027 (-) 486 WP_171263789.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LXF01_RS09685 (LXF01_09685) lpxD 1946033..1947103 (-) 1071 WP_180155486.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  LXF01_RS09690 (LXF01_09690) - 1947107..1947607 (-) 501 WP_180078385.1 OmpH family outer membrane protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37678.06 Da        Isoelectric Point: 5.0354

>NTDB_id=640545 LXF01_RS09655 WP_078188713.1 1941571..1942614(+) (recA) [Acinetobacter sp. SH20PTE14]
MDDNKSKALNAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
QCQKTGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPRAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIIGSE
TKVKVVKNKMAPPFREAIFQILYGKGVNHLGELVDLAVQQEIVQKAGAWYSYQGDKIGQGKNNTIRHLEEHPELAQTIEK
LIREQLLTTGTAPVEDKDEEEPDFLDA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=640545 LXF01_RS09655 WP_078188713.1 1941571..1942614(+) (recA) [Acinetobacter sp. SH20PTE14]
ATGGATGATAATAAAAGCAAGGCGTTAAATGCGGCCTTAAGCCAAATTGAAAAGCAGTTTGGTAAAAACACCGTAATGCG
TCTTGGTGATAATACTGTACAGGCGGTTGAGGCTGTCTCTACGGGTTCTTTAACACTAGATATCGCACTAGGTATTGGTG
GTTTACCTAAAGGTCGTATCGTAGAAATCTACGGTCCTGAATCTTCTGGTAAAACGACTATGACATTGCAAGCCATTGCC
CAATGTCAAAAAACTGGCGGTACTTGTGCATTCATCGATGCTGAACATGCATTAGACCCTCAATACGCACGTAAACTTGG
CGTAGATATTGATAACCTTCTTGTTTCACAGCCAGACAATGGTGAACAAGCGCTTGAAATTGCAGACATGCTGGTACGTT
CAGGTGCCATTGACCTGATCGTAGTCGACTCTGTAGCGGCACTTACCCCTCGCGCCGAAATTGAAGGCGAAATGGGTGAC
TCACACATGGGCTTACAAGCTCGTCTGATGAGCCAAGCACTCCGTAAAATTACTGGTAATGCAAAACGTTCGAACTGTAT
GGTGATCTTCATTAACCAAATCCGTATGAAGATTGGTGTAATGTTTGGTAGCCCAGAAACCACAACGGGCGGTAATGCAT
TGAAATTCTATGCGTCTGTACGTTTAGATATCCGCCGTATTGGTCAAGTGAAAGAAGGCGACGAGATCATTGGTTCAGAA
ACCAAAGTGAAAGTTGTGAAAAACAAAATGGCTCCTCCATTCCGTGAAGCGATTTTCCAAATTCTATACGGTAAAGGCGT
GAACCATTTAGGTGAACTTGTTGACCTTGCGGTACAACAAGAAATTGTTCAAAAAGCAGGTGCTTGGTATTCATACCAAG
GTGACAAGATTGGTCAAGGTAAAAACAATACCATTCGCCACTTAGAAGAACACCCTGAACTTGCACAAACCATTGAAAAA
CTGATTCGTGAACAACTTCTGACTACGGGTACAGCACCTGTAGAAGACAAAGACGAAGAAGAACCAGACTTTTTAGATGC
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

91.117

100

0.916
  recA Acinetobacter baumannii D1279779

91.618

99.712

0.914
  recA Pseudomonas stutzeri DSM 10701

75.684

94.813

0.718
  recA Vibrio cholerae strain A1552

73.476

94.524

0.695
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.476

94.524

0.695
  recA Glaesserella parasuis strain SC1401

72.222

93.372

0.674
  recA Ralstonia pseudosolanacearum GMI1000

70.732

94.524

0.669
  recA Neisseria gonorrhoeae MS11

65.33

100

0.657
  recA Neisseria gonorrhoeae MS11

65.33

100

0.657
  recA Neisseria gonorrhoeae strain FA1090

65.33

100

0.657
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.573

98.559

0.617
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.746

95.389

0.608
  recA Helicobacter pylori strain NCTC11637

63.914

94.236

0.602
  recA Helicobacter pylori 26695

63.609

94.236

0.599
  recA Streptococcus pneumoniae D39

60.294

97.983

0.591
  recA Streptococcus pneumoniae TIGR4

60.294

97.983

0.591
  recA Streptococcus pneumoniae Rx1

60.294

97.983

0.591
  recA Streptococcus pneumoniae R6

60.294

97.983

0.591
  recA Streptococcus mitis NCTC 12261

59.824

98.271

0.588
  recA Streptococcus mitis SK321

59.824

98.271

0.588
  recA Streptococcus mutans UA159

62.08

94.236

0.585
  recA Streptococcus pyogenes NZ131

62.154

93.66

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.127

90.778

0.582
  recA Bacillus subtilis subsp. subtilis str. 168

61.491

92.795

0.571
  recA Lactococcus lactis subsp. cremoris KW2

58.824

93.084

0.548
  recA Latilactobacillus sakei subsp. sakei 23K

59.19

92.507

0.548