Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LW347_RS16180 Genome accession   NZ_CP090065
Coordinates   3582398..3583471 (-) Length   357 a.a.
NCBI ID   WP_010285348.1    Uniprot ID   A0A0M2EVF8
Organism   Pectobacterium polonicum strain BY21311     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3577398..3588471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LW347_RS16165 (LW347_16145) csrA 3578588..3578773 (-) 186 WP_005972168.1 carbon storage regulator CsrA -
  LW347_RS16170 (LW347_16150) alaS 3579098..3581725 (-) 2628 WP_258882865.1 alanine--tRNA ligase -
  LW347_RS16175 (LW347_16155) recX 3581864..3582352 (-) 489 WP_137741684.1 recombination regulator RecX -
  LW347_RS16180 (LW347_16160) recA 3582398..3583471 (-) 1074 WP_010285348.1 recombinase RecA Machinery gene
  LW347_RS16185 (LW347_16165) pncC 3583579..3584073 (-) 495 WP_258882866.1 nicotinamide-nucleotide amidase -
  LW347_RS16190 (LW347_16170) - 3584313..3584648 (-) 336 WP_137741686.1 hypothetical protein -
  LW347_RS16195 (LW347_16175) - 3585254..3585733 (+) 480 WP_258882867.1 SRPBCC family protein -
  LW347_RS16200 (LW347_16180) - 3585817..3586491 (+) 675 WP_039307942.1 MarC family NAAT transporter -
  LW347_RS16205 (LW347_16185) - 3586674..3588272 (+) 1599 WP_137741689.1 sensor domain-containing diguanylate cyclase -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38230.71 Da        Isoelectric Point: 5.0716

>NTDB_id=640503 LW347_RS16180 WP_010285348.1 3582398..3583471(-) (recA) [Pectobacterium polonicum strain BY21311]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINIHGELVDLGVKHKLIEKAGAWYSYNGDKIGQGKANACNFLKENPAIAAEL
DKKLREMLLHKGNELTPAAAGNSHDEDEFAGEGNEEF

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=640503 LW347_RS16180 WP_010285348.1 3582398..3583471(-) (recA) [Pectobacterium polonicum strain BY21311]
ATGGCTATTGATGAGAACAAACAAAAGGCACTTGCGGCAGCACTGGGCCAAATCGAAAAGCAATTTGGTAAAGGTTCTAT
CATGCGGTTGGGCGAGGATCGCTCAATGGATGTTGAAACCATTTCTACAGGCTCTTTGTCCCTTGATATTGCTCTGGGCG
CCGGCGGTTTACCGATGGGGCGTATCGTTGAGATTTATGGACCAGAATCTTCCGGTAAAACTACGCTGACTCTACAGGTG
ATCGCTGCTGCTCAGCGCGAAGGTAAAACCTGTGCGTTCATCGACGCTGAACATGCGTTGGACCCCATTTATGCGAAAAA
GCTGGGTGTAGATATTGATAACCTGCTGTGTTCTCAGCCGGATACCGGCGAGCAGGCGTTGGAGATTTGTGATGCGCTTA
CGCGTTCTGGCGCTGTTGACGTTATCATTGTCGACTCTGTAGCTGCTTTGACGCCGAAAGCTGAAATTGAAGGTGAAATC
GGTGACTCTCATATGGGCCTTGCGGCACGTATGATGAGCCAAGCTATGCGTAAGCTGGCGGGTAACCTGAAGCAAGCCAA
TACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGCGTGATGTTTGGTAACCCTGAAACCACCACTGGCGGTA
ATGCCCTGAAATTTTACGCTTCTGTTCGTTTAGATATTCGTCGTACTGGCGCTATCAAGGAAGGTGAAGAGGTTGTCGGC
AGCGAAACGCGTGTTAAAGTTGTGAAAAATAAAGTCGCGGCGCCATTCAAGCAGGCTGAGTTCCAAATTTTGTACGGTGA
AGGCATCAATATCCACGGTGAGCTGGTTGATCTGGGTGTGAAACACAAACTGATCGAAAAAGCCGGTGCCTGGTATAGCT
ATAACGGCGACAAGATCGGTCAGGGTAAAGCAAACGCCTGTAATTTCCTGAAAGAGAATCCTGCGATTGCTGCTGAGCTG
GATAAAAAGTTGCGTGAAATGTTGCTACACAAAGGCAATGAACTGACGCCAGCCGCCGCTGGAAATAGCCATGACGAAGA
TGAATTCGCTGGCGAAGGCAACGAAGAATTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M2EVF8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

83.099

99.44

0.826
  recA Vibrio cholerae O1 biovar El Tor strain E7946

83.099

99.44

0.826
  recA Pseudomonas stutzeri DSM 10701

74.336

94.958

0.706
  recA Acinetobacter baylyi ADP1

70.809

96.919

0.686
  recA Glaesserella parasuis strain SC1401

69.231

98.319

0.681
  recA Acinetobacter baumannii D1279779

72.727

92.437

0.672
  recA Neisseria gonorrhoeae MS11

69.632

91.317

0.636
  recA Neisseria gonorrhoeae MS11

69.632

91.317

0.636
  recA Neisseria gonorrhoeae strain FA1090

69.632

91.317

0.636
  recA Ralstonia pseudosolanacearum GMI1000

70.418

87.115

0.613
  recA Streptococcus pneumoniae R6

60

99.44

0.597
  recA Streptococcus pneumoniae Rx1

60

99.44

0.597
  recA Streptococcus pneumoniae D39

60

99.44

0.597
  recA Streptococcus pneumoniae TIGR4

60

99.44

0.597
  recA Helicobacter pylori strain NCTC11637

62.997

91.597

0.577
  recA Helicobacter pylori 26695

62.691

91.597

0.574
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.08

91.597

0.569
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.299

93.838

0.566
  recA Streptococcus mitis SK321

62.539

90.476

0.566
  recA Streptococcus mitis NCTC 12261

62.539

90.476

0.566
  recA Streptococcus pyogenes NZ131

62.154

91.036

0.566
  recA Streptococcus mutans UA159

62.154

91.036

0.566
  recA Lactococcus lactis subsp. cremoris KW2

62.229

90.476

0.563
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

89.916

0.56
  recA Latilactobacillus sakei subsp. sakei 23K

61.231

91.036

0.557
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.589

91.317

0.535