Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | LWC40_RS06750 | Genome accession | NZ_CP090060 |
| Coordinates | 1429390..1430436 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain CDB | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1403331..1468211 | 1429390..1430436 | within | 0 |
Gene organization within MGE regions
Location: 1403331..1468211
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LWC40_RS06635 (LWC40_06635) | rimP | 1405747..1406208 (+) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| LWC40_RS06640 (LWC40_06640) | nusA | 1406238..1407392 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| LWC40_RS06645 (LWC40_06645) | rnpM | 1407399..1407680 (+) | 282 | WP_003419469.1 | RNase P modulator RnpM | - |
| LWC40_RS06650 (LWC40_06650) | - | 1407670..1407981 (+) | 312 | WP_003419470.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| LWC40_RS06655 (LWC40_06655) | infB | 1408003..1409943 (+) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| LWC40_RS06660 (LWC40_06660) | rbfA | 1409986..1410366 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| LWC40_RS06665 (LWC40_06665) | - | 1410347..1411024 (+) | 678 | Protein_1222 | DHH family phosphoesterase | - |
| LWC40_RS06670 (LWC40_06670) | tnpB | 1411673..1412791 (+) | 1119 | WP_011861173.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| LWC40_RS06675 (LWC40_06675) | - | 1412909..1413214 (+) | 306 | Protein_1224 | DHH family phosphoesterase | - |
| LWC40_RS06680 (LWC40_06680) | truB | 1413227..1414132 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| LWC40_RS06685 (LWC40_06685) | - | 1414263..1415192 (+) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| LWC40_RS06690 (LWC40_06690) | rpsO | 1415296..1415553 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| LWC40_RS06695 (LWC40_06695) | - | 1415793..1416638 (+) | 846 | WP_009889099.1 | DegV family protein | - |
| LWC40_RS06700 (LWC40_06700) | pnp | 1416763..1418874 (+) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| LWC40_RS06705 (LWC40_06705) | - | 1419142..1419885 (+) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| LWC40_RS06710 (LWC40_06710) | - | 1420043..1421290 (+) | 1248 | WP_003438321.1 | M16 family metallopeptidase | - |
| LWC40_RS06715 (LWC40_06715) | - | 1421325..1421570 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| LWC40_RS06720 (LWC40_06720) | dapG | 1421580..1422803 (+) | 1224 | WP_003438324.1 | aspartate kinase | - |
| LWC40_RS06725 (LWC40_06725) | - | 1422916..1423650 (+) | 735 | WP_003428224.1 | ClpP family protease | - |
| LWC40_RS06730 (LWC40_06730) | - | 1423773..1426184 (+) | 2412 | WP_003438328.1 | FtsK/SpoIIIE family DNA translocase | - |
| LWC40_RS06735 (LWC40_06735) | mnmH | 1426187..1427245 (+) | 1059 | WP_011861175.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| LWC40_RS06740 (LWC40_06740) | rimO | 1427239..1428573 (+) | 1335 | WP_011861176.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| LWC40_RS06745 (LWC40_06745) | pgsA | 1428560..1429102 (+) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| LWC40_RS06750 (LWC40_06750) | recA | 1429390..1430436 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| LWC40_RS06755 (LWC40_06755) | rny | 1430612..1432153 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| LWC40_RS06760 (LWC40_06760) | - | 1432788..1434569 (+) | 1782 | WP_011861177.1 | UvrD-helicase domain-containing protein | - |
| LWC40_RS06765 (LWC40_06765) | lepB | 1434651..1435181 (-) | 531 | WP_011861178.1 | signal peptidase I | - |
| LWC40_RS06770 (LWC40_06770) | - | 1435221..1436045 (-) | 825 | WP_009905410.1 | undecaprenyl-diphosphate phosphatase | - |
| LWC40_RS06775 (LWC40_06775) | - | 1436302..1437210 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| LWC40_RS06780 (LWC40_06780) | purB | 1437354..1438799 (+) | 1446 | WP_003438353.1 | adenylosuccinate lyase | - |
| LWC40_RS06785 (LWC40_06785) | - | 1439110..1439562 (+) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| LWC40_RS06790 (LWC40_06790) | - | 1439974..1441551 (+) | 1578 | WP_011861179.1 | PTS transporter subunit EIIC | - |
| LWC40_RS06795 (LWC40_06795) | - | 1441699..1442451 (+) | 753 | WP_009892977.1 | MurR/RpiR family transcriptional regulator | - |
| LWC40_RS06800 (LWC40_06800) | - | 1442584..1443930 (+) | 1347 | WP_009892979.1 | 6-phospho-alpha-glucosidase | - |
| LWC40_RS06805 (LWC40_06805) | - | 1444042..1445238 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| LWC40_RS06810 (LWC40_06810) | galT | 1445623..1446573 (+) | 951 | WP_003438360.1 | galactose-1-phosphate uridylyltransferase | - |
| LWC40_RS06815 (LWC40_06815) | - | 1446733..1447485 (+) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| LWC40_RS06820 (LWC40_06820) | - | 1447577..1448353 (-) | 777 | WP_016729594.1 | 3'-5' exonuclease | - |
| LWC40_RS06825 (LWC40_06825) | - | 1448668..1450566 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| LWC40_RS06830 (LWC40_06830) | - | 1450694..1451815 (-) | 1122 | WP_003438374.1 | MGDG synthase family glycosyltransferase | - |
| LWC40_RS06835 (LWC40_06835) | - | 1452014..1452346 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| LWC40_RS06840 (LWC40_06840) | - | 1452333..1453415 (+) | 1083 | WP_011861182.1 | DUF1700 domain-containing protein | - |
| LWC40_RS06845 (LWC40_06845) | - | 1453408..1454478 (+) | 1071 | WP_011861183.1 | DUF4097 family beta strand repeat-containing protein | - |
| LWC40_RS06850 (LWC40_06850) | - | 1454580..1455116 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| LWC40_RS06855 (LWC40_06855) | - | 1455232..1455939 (+) | 708 | WP_009896245.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| LWC40_RS06860 (LWC40_06860) | - | 1455941..1456657 (+) | 717 | WP_009896246.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| LWC40_RS06865 (LWC40_06865) | - | 1456659..1457417 (+) | 759 | WP_011861184.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| LWC40_RS06870 (LWC40_06870) | - | 1457552..1458940 (+) | 1389 | WP_011861185.1 | two-component system sensor histidine kinase | - |
| LWC40_RS06875 (LWC40_06875) | - | 1459016..1459837 (-) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| LWC40_RS06880 (LWC40_06880) | - | 1460088..1461242 (+) | 1155 | WP_009902426.1 | amidase domain-containing protein | - |
| LWC40_RS06885 (LWC40_06885) | - | 1461425..1461625 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| LWC40_RS06890 (LWC40_06890) | - | 1462046..1462474 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| LWC40_RS06895 (LWC40_06895) | - | 1462617..1463372 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| LWC40_RS06900 (LWC40_06900) | - | 1464073..1464579 (-) | 507 | WP_011861186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| LWC40_RS06905 (LWC40_06905) | - | 1464661..1464981 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| LWC40_RS06910 (LWC40_06910) | - | 1465150..1465347 (+) | 198 | WP_011861187.1 | helix-turn-helix transcriptional regulator | - |
| LWC40_RS06915 (LWC40_06915) | - | 1465452..1465892 (+) | 441 | WP_003428183.1 | hypothetical protein | - |
| LWC40_RS06920 (LWC40_06920) | - | 1466141..1466584 (+) | 444 | WP_009896258.1 | phage tail terminator family protein | - |
| LWC40_RS06925 (LWC40_06925) | - | 1466589..1467653 (+) | 1065 | WP_011861188.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| LWC40_RS06930 (LWC40_06930) | - | 1467667..1468095 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=640429 LWC40_RS06750 WP_003428218.1 1429390..1430436(+) (recA) [Clostridioides difficile strain CDB]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=640429 LWC40_RS06750 WP_003428218.1 1429390..1430436(+) (recA) [Clostridioides difficile strain CDB]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.