Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LV716_RS07135 Genome accession   NZ_CP090004
Coordinates   1599472..1600479 (+) Length   335 a.a.
NCBI ID   WP_163417061.1    Uniprot ID   -
Organism   Flagellimonas sp. HMM57     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1594472..1605479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LV716_RS07120 (LV716_07120) - 1596413..1596901 (-) 489 WP_163417058.1 gliding motility lipoprotein GldH -
  LV716_RS07125 (LV716_07125) - 1596891..1598048 (-) 1158 WP_163417059.1 regulatory iron-sulfur-containing complex subunit RicT -
  LV716_RS07130 (LV716_07130) - 1598149..1599180 (-) 1032 WP_163417060.1 rhodanese-related sulfurtransferase -
  LV716_RS07135 (LV716_07135) recA 1599472..1600479 (+) 1008 WP_163417061.1 recombinase RecA Machinery gene
  LV716_RS07140 (LV716_07140) - 1600576..1601013 (+) 438 WP_233759253.1 hypothetical protein -
  LV716_RS07145 (LV716_07145) - 1601042..1601572 (+) 531 WP_163417062.1 RNA polymerase sigma factor -
  LV716_RS07150 (LV716_07150) - 1601584..1603149 (+) 1566 WP_163417063.1 outer membrane beta-barrel protein -
  LV716_RS07155 (LV716_07155) - 1603313..1604479 (+) 1167 WP_163417064.1 histidine kinase -
  LV716_RS07160 (LV716_07160) - 1604556..1605290 (-) 735 WP_163417065.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36059.42 Da        Isoelectric Point: 6.5160

>NTDB_id=640024 LV716_RS07135 WP_163417061.1 1599472..1600479(+) (recA) [Flagellimonas sp. HMM57]
MSNEKEAKLKALKLTLDKLDKTYGKGAVMKMGDSVVEDIEVIPSGSLGLDIALGVSGYPRGRVIEIYGPESSGKTTLTLH
AIAEAQKNGGIAAFIDAEHAFDRFYAKKLGVDIDNLIISQPDHGEQALEIADNLIRSGAIDIVIVDSVAALTPKSEIEGE
MGDSKMGLHARLMSQALRKLTSTISKTNCTVVFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKNTEGNV
LGNKTRVKVVKNKVAPPFKTAEFDIMYGEGISKIGEILDLGVAYEIVKKSGSWFSYGDTKLGQGRDAVKSLLADNPELAE
ELEGKIKEAIAAVNA

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=640024 LV716_RS07135 WP_163417061.1 1599472..1600479(+) (recA) [Flagellimonas sp. HMM57]
ATGAGCAACGAAAAAGAAGCAAAACTAAAAGCACTAAAACTTACATTGGATAAACTGGACAAAACCTACGGTAAAGGTGC
TGTCATGAAAATGGGAGATAGTGTCGTTGAAGATATTGAAGTAATCCCTTCTGGATCGTTAGGACTTGATATTGCTTTGG
GCGTAAGTGGTTATCCCAGAGGTAGGGTCATAGAAATTTATGGACCTGAATCTTCTGGTAAAACTACATTGACGCTACAT
GCTATTGCCGAAGCACAAAAAAATGGCGGTATTGCAGCGTTTATTGATGCTGAACATGCTTTTGATCGTTTCTATGCCAA
AAAATTAGGTGTAGATATCGACAATCTTATTATCTCCCAACCTGATCATGGTGAACAAGCTTTGGAAATTGCCGATAATC
TAATCCGTTCTGGTGCCATTGATATTGTTATTGTTGATTCTGTGGCAGCCCTTACCCCAAAAAGTGAAATTGAAGGGGAA
ATGGGAGATTCCAAAATGGGGTTGCATGCACGTTTAATGTCACAAGCGTTACGAAAACTTACCTCCACCATAAGCAAAAC
AAATTGCACCGTGGTCTTTATTAACCAATTGCGCGAAAAAATTGGGGTCATGTTTGGGAATCCCGAGACCACTACAGGTG
GTAATGCACTTAAGTTTTACGCTTCTGTTCGATTGGATATTAGGCGATCAACACAAATAAAAAATACGGAAGGAAATGTG
TTGGGGAACAAAACAAGGGTTAAAGTTGTAAAAAACAAAGTTGCTCCTCCTTTTAAAACTGCTGAGTTTGATATTATGTA
TGGGGAAGGAATTTCCAAAATAGGAGAGATTCTTGATTTAGGGGTAGCCTACGAAATTGTAAAGAAAAGTGGTTCTTGGT
TTAGCTATGGGGATACCAAGCTTGGACAAGGTAGGGATGCCGTTAAGTCGCTGTTGGCAGATAATCCAGAACTTGCAGAA
GAACTTGAGGGTAAAATTAAAGAAGCCATTGCCGCGGTAAACGCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

76.97

98.507

0.758
  recA Glaesserella parasuis strain SC1401

63.83

98.209

0.627
  recA Helicobacter pylori strain NCTC11637

64.024

97.91

0.627
  recA Helicobacter pylori 26695

64.024

97.91

0.627
  recA Neisseria gonorrhoeae MS11

67.203

92.836

0.624
  recA Neisseria gonorrhoeae MS11

67.203

92.836

0.624
  recA Neisseria gonorrhoeae strain FA1090

67.203

92.836

0.624
  recA Ralstonia pseudosolanacearum GMI1000

66.667

93.134

0.621
  recA Acinetobacter baumannii D1279779

63.804

97.313

0.621
  recA Bacillus subtilis subsp. subtilis str. 168

64.577

95.224

0.615
  recA Acinetobacter baylyi ADP1

63.58

96.716

0.615
  recA Pseudomonas stutzeri DSM 10701

61.934

98.806

0.612
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.272

96.716

0.612
  recA Vibrio cholerae strain A1552

62.154

97.015

0.603
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.154

97.015

0.603
  recA Streptococcus mitis SK321

62.112

96.119

0.597
  recA Streptococcus mitis NCTC 12261

62.112

96.119

0.597
  recA Streptococcus pneumoniae TIGR4

60.182

98.209

0.591
  recA Streptococcus pneumoniae Rx1

60.182

98.209

0.591
  recA Streptococcus pneumoniae D39

60.182

98.209

0.591
  recA Streptococcus pneumoniae R6

60.182

98.209

0.591
  recA Latilactobacillus sakei subsp. sakei 23K

60.615

97.015

0.588
  recA Streptococcus pyogenes NZ131

60.681

96.418

0.585
  recA Lactococcus lactis subsp. cremoris KW2

59.443

96.418

0.573
  recA Streptococcus mutans UA159

59.502

95.821

0.57
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56

97.015

0.543