Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LV704_RS08225 Genome accession   NZ_CP090003
Coordinates   1792663..1793670 (+) Length   335 a.a.
NCBI ID   WP_163420845.1    Uniprot ID   -
Organism   Flagellimonas sp. CMM7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1787663..1798670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LV704_RS08205 (LV704_08205) - 1789127..1789615 (-) 489 WP_163420849.1 gliding motility lipoprotein GldH -
  LV704_RS08210 (LV704_08210) - 1789605..1790765 (-) 1161 WP_163420848.1 regulatory iron-sulfur-containing complex subunit RicT -
  LV704_RS08215 (LV704_08215) - 1790867..1791898 (-) 1032 WP_163420847.1 rhodanese-related sulfurtransferase -
  LV704_RS08220 (LV704_08220) - 1792147..1792557 (-) 411 WP_163420846.1 hypothetical protein -
  LV704_RS08225 (LV704_08225) recA 1792663..1793670 (+) 1008 WP_163420845.1 recombinase RecA Machinery gene
  LV704_RS08230 (LV704_08230) - 1793766..1794194 (+) 429 WP_233782176.1 hypothetical protein -
  LV704_RS08235 (LV704_08235) - 1794243..1794773 (+) 531 WP_163420844.1 RNA polymerase sigma factor -
  LV704_RS08240 (LV704_08240) - 1794785..1796371 (+) 1587 WP_163420843.1 hypothetical protein -
  LV704_RS08245 (LV704_08245) - 1796519..1797556 (+) 1038 WP_163420842.1 7TM-DISM domain-containing protein -
  LV704_RS08250 (LV704_08250) - 1797514..1798356 (+) 843 WP_163420841.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36067.27 Da        Isoelectric Point: 5.5465

>NTDB_id=640014 LV704_RS08225 WP_163420845.1 1792663..1793670(+) (recA) [Flagellimonas sp. CMM7]
MSNEKEAKLKALKLTLDKLDKTYGKGAVMKMGDSVVEDVEVIPSGSLGLDIALGVSGYPRGRVVEIYGPESSGKTTLTLH
AIAEAQKNGGIAAFIDAEHAFDRFYAQKLGVDIDNLIISQPDNGEQALEIADNLIRSGAIDIVIVDSVAALTPKSEIEGE
MGDSKMGLHARLMSQALRKLTSSISKTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKDTDGAV
LGNKTRVKVVKNKVAPPFRTAEFDIMYGEGISKIGEILDLGVAYEIVKKSGSWFSYGDTKLGQGRDAVKSLLADNPELSD
ELEAKIREAINAVNA

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=640014 LV704_RS08225 WP_163420845.1 1792663..1793670(+) (recA) [Flagellimonas sp. CMM7]
ATGAGCAACGAAAAAGAAGCAAAACTAAAAGCCTTAAAGCTTACACTGGATAAATTGGATAAGACCTACGGAAAAGGTGC
TGTCATGAAAATGGGAGATAGCGTAGTTGAAGATGTTGAGGTGATTCCTTCTGGATCGTTAGGACTAGATATTGCCTTGG
GCGTAAGCGGTTATCCAAGAGGTAGGGTTGTTGAGATTTATGGCCCAGAATCTTCTGGTAAAACTACATTGACGCTACAT
GCAATTGCCGAAGCTCAAAAAAATGGAGGTATTGCTGCTTTTATTGATGCAGAACATGCTTTTGACCGTTTTTATGCTCA
AAAATTAGGCGTAGATATAGACAACCTTATTATTTCTCAACCAGATAATGGTGAGCAGGCATTGGAAATAGCAGATAACC
TTATACGATCAGGCGCTATTGATATTGTTATTGTTGATTCTGTTGCCGCACTTACTCCAAAAAGTGAAATTGAAGGAGAA
ATGGGAGATTCTAAAATGGGACTTCATGCCCGTTTAATGTCTCAAGCATTGAGGAAATTGACTTCTTCAATCAGCAAAAC
CAATTGCACTGTAATCTTTATTAACCAATTGCGAGAAAAAATTGGGGTCATGTTTGGAAATCCGGAAACTACCACGGGTG
GAAATGCGCTTAAATTCTATGCTTCCGTACGTTTAGATATCAGGAGATCTACACAAATAAAAGATACAGACGGAGCTGTA
CTAGGGAACAAAACGAGAGTCAAGGTGGTAAAGAATAAAGTTGCACCTCCTTTTAGAACTGCAGAATTTGACATCATGTA
TGGAGAAGGCATCTCTAAAATTGGAGAAATCCTTGATCTTGGGGTAGCCTATGAAATTGTAAAGAAAAGCGGTTCTTGGT
TTAGCTATGGAGACACAAAGCTTGGTCAAGGAAGAGATGCCGTAAAATCACTACTTGCAGACAATCCGGAATTATCCGAT
GAATTAGAAGCAAAAATTAGAGAGGCCATTAACGCAGTTAACGCCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

77.879

98.507

0.767
  recA Neisseria gonorrhoeae MS11

68.139

94.627

0.645
  recA Neisseria gonorrhoeae MS11

68.139

94.627

0.645
  recA Neisseria gonorrhoeae strain FA1090

68.139

94.627

0.645
  recA Glaesserella parasuis strain SC1401

65.138

97.612

0.636
  recA Ralstonia pseudosolanacearum GMI1000

67.949

93.134

0.633
  recA Acinetobacter baylyi ADP1

65.325

96.418

0.63
  recA Helicobacter pylori strain NCTC11637

63.11

97.91

0.618
  recA Helicobacter pylori 26695

63.11

97.91

0.618
  recA Acinetobacter baumannii D1279779

63.692

97.015

0.618
  recA Bacillus subtilis subsp. subtilis str. 168

64.78

94.925

0.615
  recA Pseudomonas stutzeri DSM 10701

63.975

96.119

0.615
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.654

96.716

0.606
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.154

97.015

0.603
  recA Vibrio cholerae strain A1552

62.154

97.015

0.603
  recA Streptococcus mitis NCTC 12261

62.617

95.821

0.6
  recA Latilactobacillus sakei subsp. sakei 23K

61.35

97.313

0.597
  recA Streptococcus mitis SK321

62.305

95.821

0.597
  recA Streptococcus pyogenes NZ131

61.61

96.418

0.594
  recA Streptococcus pneumoniae R6

61.682

95.821

0.591
  recA Streptococcus pneumoniae TIGR4

61.682

95.821

0.591
  recA Streptococcus pneumoniae Rx1

61.682

95.821

0.591
  recA Streptococcus pneumoniae D39

61.682

95.821

0.591
  recA Streptococcus mutans UA159

61.059

95.821

0.585
  recA Lactococcus lactis subsp. cremoris KW2

60.372

96.418

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.615

97.015

0.549