Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | LVW35_RS05765 | Genome accession | NZ_CP089985 |
| Coordinates | 1275859..1276917 (+) | Length | 352 a.a. |
| NCBI ID | WP_233894174.1 | Uniprot ID | - |
| Organism | Pseudomonas sp. HN11 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1264454..1275192 | 1275859..1276917 | flank | 667 |
Gene organization within MGE regions
Location: 1264454..1276917
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LVW35_RS05700 (LVW35_05700) | fdxA | 1265800..1266123 (-) | 324 | WP_233894166.1 | ferredoxin FdxA | - |
| LVW35_RS05705 (LVW35_05705) | mutS | 1266266..1268857 (-) | 2592 | WP_233896415.1 | DNA mismatch repair protein MutS | - |
| LVW35_RS05710 (LVW35_05710) | - | 1269026..1269397 (-) | 372 | WP_046034443.1 | hypothetical protein | - |
| LVW35_RS05715 (LVW35_05715) | - | 1269390..1269878 (-) | 489 | WP_233894167.1 | type II toxin-antitoxin system antitoxin SocA domain-containing protein | - |
| LVW35_RS05720 (LVW35_05720) | - | 1270146..1270880 (+) | 735 | WP_233894168.1 | XRE family transcriptional regulator | - |
| LVW35_RS05725 (LVW35_05725) | - | 1271477..1271821 (+) | 345 | WP_233894169.1 | phage holin family protein | - |
| LVW35_RS05730 (LVW35_05730) | - | 1271843..1272400 (+) | 558 | WP_233894170.1 | hypothetical protein | - |
| LVW35_RS05735 (LVW35_05735) | - | 1272394..1272552 (+) | 159 | WP_080589265.1 | Com family DNA-binding transcriptional regulator | - |
| LVW35_RS05740 (LVW35_05740) | - | 1272591..1273553 (+) | 963 | WP_068936980.1 | hypothetical protein | - |
| LVW35_RS05745 (LVW35_05745) | - | 1273942..1274127 (+) | 186 | Protein_1124 | MFS transporter | - |
| LVW35_RS05750 (LVW35_05750) | - | 1274186..1274743 (+) | 558 | WP_100491395.1 | glycoside hydrolase family 19 protein | - |
| LVW35_RS05755 (LVW35_05755) | - | 1274731..1275192 (+) | 462 | WP_233894173.1 | lysis system i-spanin subunit Rz | - |
| LVW35_RS05760 (LVW35_05760) | - | 1275274..1275774 (+) | 501 | WP_078047145.1 | nicotinamide-nucleotide amidohydrolase family protein | - |
| LVW35_RS05765 (LVW35_05765) | recA | 1275859..1276917 (+) | 1059 | WP_233894174.1 | recombinase RecA | Machinery gene |
Sequence
Protein
Download Length: 352 a.a. Molecular weight: 37566.09 Da Isoelectric Point: 5.2997
>NTDB_id=639700 LVW35_RS05765 WP_233894174.1 1275859..1276917(+) (recA) [Pseudomonas sp. HN11]
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDIAATLEK
QIRDKLLTAAPDVKAAANRDPVEEVEEADTDI
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDIAATLEK
QIRDKLLTAAPDVKAAANRDPVEEVEEADTDI
Nucleotide
Download Length: 1059 bp
>NTDB_id=639700 LVW35_RS05765 WP_233894174.1 1275859..1276917(+) (recA) [Pseudomonas sp. HN11]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCGATCCCGGCTATTTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGTG
GCCTGCCAAAAGGCCGTATTGTCGAAATCTACGGTCCTGAATCTTCCGGTAAGACTACCCTGACCCTGTCGGTGATTGCC
CAGGCGCAAAAAATGGGCGCCACCTGTGCGTTCGTCGACGCCGAGCACGCCCTGGACCCTGAATATGCCGGCAAGCTGGG
CGTCAACGTTGACGACCTGCTGGTTTCCCAGCCGGACACCGGTGAGCAAGCCCTGGAAATCACCGACATGTTGGTGCGCT
CCAACGCCATCGACGTGATCGTGGTCGATTCCGTGGCTGCCCTGGTGCCCAAGGCTGAAATCGAAGGCGAAATGGGTGAT
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATTACCGGTAACATCAAGAACGCCAATTGCCT
GGTGATCTTCATCAACCAGATCCGTATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGCGGTAACGCGC
TGAAGTTCTACGCTTCGGTCCGTCTGGATATCCGCCGTACTGGCGCGGTGAAAGAAGGTGACGAGGTTGTGGGTAGCGAA
ACCCGCGTTAAAGTCGTGAAGAACAAAGTGGCCCCGCCTTTCCGTCAGGCCGAGTTCCAGATTCTCTACGGCAAGGGTAT
CTACCTGAACGGCGAGATGATCGACTTGGGCGTGTTGCACGGTTTCGTCGAGAAATCCGGTGCATGGTATGCCTACAACG
GCAGCAAGATCGGCCAAGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGACAATCCGGACATTGCTGCTACGCTTGAAAAG
CAGATTCGCGACAAGCTGCTGACCGCCGCTCCAGACGTGAAAGCTGCCGCCAACCGCGATCCGGTTGAAGAAGTGGAAGA
AGCTGACACTGACATCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCGATCCCGGCTATTTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGTG
GCCTGCCAAAAGGCCGTATTGTCGAAATCTACGGTCCTGAATCTTCCGGTAAGACTACCCTGACCCTGTCGGTGATTGCC
CAGGCGCAAAAAATGGGCGCCACCTGTGCGTTCGTCGACGCCGAGCACGCCCTGGACCCTGAATATGCCGGCAAGCTGGG
CGTCAACGTTGACGACCTGCTGGTTTCCCAGCCGGACACCGGTGAGCAAGCCCTGGAAATCACCGACATGTTGGTGCGCT
CCAACGCCATCGACGTGATCGTGGTCGATTCCGTGGCTGCCCTGGTGCCCAAGGCTGAAATCGAAGGCGAAATGGGTGAT
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATTACCGGTAACATCAAGAACGCCAATTGCCT
GGTGATCTTCATCAACCAGATCCGTATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGCGGTAACGCGC
TGAAGTTCTACGCTTCGGTCCGTCTGGATATCCGCCGTACTGGCGCGGTGAAAGAAGGTGACGAGGTTGTGGGTAGCGAA
ACCCGCGTTAAAGTCGTGAAGAACAAAGTGGCCCCGCCTTTCCGTCAGGCCGAGTTCCAGATTCTCTACGGCAAGGGTAT
CTACCTGAACGGCGAGATGATCGACTTGGGCGTGTTGCACGGTTTCGTCGAGAAATCCGGTGCATGGTATGCCTACAACG
GCAGCAAGATCGGCCAAGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGACAATCCGGACATTGCTGCTACGCTTGAAAAG
CAGATTCGCGACAAGCTGCTGACCGCCGCTCCAGACGTGAAAGCTGCCGCCAACCGCGATCCGGTTGAAGAAGTGGAAGA
AGCTGACACTGACATCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.