Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LVD17_RS02570 Genome accession   NZ_CP089981
Coordinates   599751..600779 (+) Length   342 a.a.
NCBI ID   WP_233764571.1    Uniprot ID   -
Organism   Fulvivirga ulvae strain SS9-22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 594751..605779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVD17_RS02545 (LVD17_02545) - 594774..595829 (-) 1056 WP_233764565.1 cell wall metabolism sensor histidine kinase WalK -
  LVD17_RS02550 (LVD17_02550) - 595833..596522 (-) 690 WP_233764566.1 response regulator transcription factor -
  LVD17_RS02555 (LVD17_02555) - 596631..597431 (-) 801 WP_233764567.1 DUF3108 domain-containing protein -
  LVD17_RS02560 (LVD17_02560) - 597456..598478 (-) 1023 WP_233764568.1 aminopeptidase -
  LVD17_RS02565 (LVD17_02565) - 598475..599611 (-) 1137 WP_233764569.1 hypothetical protein -
  LVD17_RS02570 (LVD17_02570) recA 599751..600779 (+) 1029 WP_233764571.1 recombinase RecA Machinery gene
  LVD17_RS02575 (LVD17_02575) - 600879..602144 (-) 1266 WP_233767917.1 ABC transporter permease -
  LVD17_RS02580 (LVD17_02580) queA 602261..603307 (+) 1047 WP_233764572.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  LVD17_RS02585 (LVD17_02585) - 603365..604054 (+) 690 WP_233764573.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  LVD17_RS02590 (LVD17_02590) - 604121..604342 (-) 222 WP_009578808.1 DUF2795 domain-containing protein -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 36994.77 Da        Isoelectric Point: 5.5968

>NTDB_id=639667 LVD17_RS02570 WP_233764571.1 599751..600779(+) (recA) [Fulvivirga ulvae strain SS9-22]
MAEKDEKLKALQLTIDKLEKTFGKGAVMKLSDERVVDVPAISTGSLSLDLALGVGGIPRGRVIEIYGPESSGKTTLSMHC
IAEAQKKGGLAAFIDAEHAFDRVYAEKLGIDTENLLISQPDSGEQALEIAEHLIRSGAIDIIVIDSVAALVPKGELEGEM
GDSKMGLQARLMSQALRKLTGTINKTGCACIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRIGQIKEGANDIT
GNRTRVKVVKNKVSPPFKVVEFDIMYGKGISKVGEIIDLGVELEVIKKAGSWFSYDGNKLGQGRDAVKTLLEDNPELMDE
LEAKIKAKIKGEDLEKPIPAQE

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=639667 LVD17_RS02570 WP_233764571.1 599751..600779(+) (recA) [Fulvivirga ulvae strain SS9-22]
ATGGCTGAAAAGGACGAAAAATTAAAAGCACTTCAATTAACAATTGATAAACTGGAAAAAACCTTTGGAAAAGGTGCAGT
GATGAAGCTAAGTGATGAGCGGGTAGTGGATGTACCAGCCATCTCCACGGGATCCTTAAGCCTTGACCTGGCATTGGGTG
TTGGCGGAATTCCTAGAGGAAGAGTTATTGAAATATACGGCCCTGAATCTTCAGGTAAGACTACTTTGTCTATGCATTGC
ATAGCCGAAGCTCAAAAGAAAGGTGGCCTTGCAGCATTTATTGATGCCGAACACGCCTTTGACAGGGTATATGCAGAAAA
ATTAGGCATTGATACCGAAAACCTGCTTATCTCTCAGCCAGATAGTGGTGAACAGGCGTTGGAAATTGCAGAGCACCTGA
TACGTTCGGGAGCTATTGATATTATCGTAATTGACTCGGTAGCTGCCCTTGTACCAAAAGGTGAGCTTGAAGGTGAAATG
GGTGACAGTAAAATGGGTCTCCAGGCCCGATTGATGTCTCAGGCACTGAGAAAGCTCACAGGAACTATCAATAAAACCGG
CTGCGCATGCATCTTCATCAACCAGTTGAGAGAAAAGATCGGCGTGATGTTCGGAAACCCTGAAACAACTACCGGTGGTA
ATGCCTTGAAATTTTATGCTTCTGTACGTCTCGACATTCGCAGAATAGGCCAGATTAAAGAAGGGGCTAATGACATTACC
GGTAACCGTACCCGTGTAAAAGTGGTAAAAAACAAAGTTTCTCCTCCCTTTAAAGTAGTAGAGTTTGACATCATGTATGG
CAAGGGAATTTCCAAGGTTGGTGAGATCATAGACCTGGGTGTTGAGTTAGAGGTGATCAAAAAGGCCGGCTCATGGTTCT
CGTATGATGGCAATAAGTTGGGACAAGGACGTGATGCGGTAAAGACATTGCTCGAAGATAATCCTGAACTAATGGATGAA
CTTGAAGCCAAAATTAAAGCTAAAATCAAAGGTGAGGATCTGGAAAAACCAATACCGGCGCAGGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

69.069

97.368

0.673
  recA Helicobacter pylori strain NCTC11637

62.059

99.415

0.617
  recA Helicobacter pylori 26695

61.765

99.415

0.614
  recA Ralstonia pseudosolanacearum GMI1000

67.308

91.228

0.614
  recA Acinetobacter baylyi ADP1

64.308

95.029

0.611
  recA Neisseria gonorrhoeae MS11

64.506

94.737

0.611
  recA Neisseria gonorrhoeae strain FA1090

64.506

94.737

0.611
  recA Neisseria gonorrhoeae MS11

64.506

94.737

0.611
  recA Acinetobacter baumannii D1279779

63.692

95.029

0.605
  recA Glaesserella parasuis strain SC1401

62.963

94.737

0.596
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

93.86

0.591
  recA Pseudomonas stutzeri DSM 10701

61.846

95.029

0.588
  recA Latilactobacillus sakei subsp. sakei 23K

58.824

99.415

0.585
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.112

94.152

0.585
  recA Vibrio cholerae strain A1552

62.112

94.152

0.585
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.991

94.444

0.576
  recA Streptococcus pyogenes NZ131

59.756

95.906

0.573
  recA Streptococcus mitis NCTC 12261

58.333

98.246

0.573
  recA Streptococcus pneumoniae Rx1

58.036

98.246

0.57
  recA Streptococcus pneumoniae D39

58.036

98.246

0.57
  recA Streptococcus pneumoniae R6

58.036

98.246

0.57
  recA Streptococcus pneumoniae TIGR4

58.036

98.246

0.57
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.692

95.029

0.567
  recA Streptococcus mitis SK321

58.537

95.906

0.561
  recA Streptococcus mutans UA159

58.104

95.614

0.556
  recA Lactococcus lactis subsp. cremoris KW2

58.154

95.029

0.553