Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LVD15_RS11475 Genome accession   NZ_CP089980
Coordinates   2680202..2681230 (-) Length   342 a.a.
NCBI ID   WP_233780468.1    Uniprot ID   -
Organism   Fulvivirga maritima strain SW1-E11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2675202..2686230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVD15_RS11455 (LVD15_11455) - 2676625..2676846 (+) 222 WP_009578808.1 DUF2795 domain-containing protein -
  LVD15_RS11460 (LVD15_11460) - 2676895..2677581 (-) 687 WP_233780465.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  LVD15_RS11465 (LVD15_11465) queA 2677706..2678752 (-) 1047 WP_233780466.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  LVD15_RS11470 (LVD15_11470) - 2678860..2680125 (+) 1266 WP_233780467.1 ABC transporter permease -
  LVD15_RS11475 (LVD15_11475) recA 2680202..2681230 (-) 1029 WP_233780468.1 recombinase RecA Machinery gene
  LVD15_RS11480 (LVD15_11480) - 2681376..2682518 (+) 1143 WP_233780469.1 hypothetical protein -
  LVD15_RS11485 (LVD15_11485) - 2682511..2683536 (+) 1026 WP_233780470.1 aminopeptidase -
  LVD15_RS11490 (LVD15_11490) - 2683559..2684356 (+) 798 WP_233780471.1 DUF3108 domain-containing protein -
  LVD15_RS11495 (LVD15_11495) - 2684465..2685154 (+) 690 WP_233780472.1 response regulator transcription factor -
  LVD15_RS11500 (LVD15_11500) - 2685158..2686210 (+) 1053 WP_233780473.1 cell wall metabolism sensor histidine kinase WalK -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 37085.77 Da        Isoelectric Point: 5.2117

>NTDB_id=639662 LVD15_RS11475 WP_233780468.1 2680202..2681230(-) (recA) [Fulvivirga maritima strain SW1-E11]
MAEKDEKLKALQLTIDKLEKTFGKGTVMKLSDERVVDVPAISTGSLSLDIALGVGGIPRGRVIEIYGPESSGKTTLSMHC
IAEAQKNGGLAAFIDAEHAFDRVYAEKLGIDTENLLISQPDSGEQALEIAEHLIRSGAIDIIVIDSVAALVPKGELEGEM
GDSKMGLQARLMSQALRKLTGTINKTGCSCIFINQLREKIGVMFGNPETTTGGNALKFYASVRMDIRRIGQIKEGANDII
GNRTRVKVVKNKVAPPFKVVEFDIMYGKGISKVGEVLDLGVELEIVKKAGSWFSYDGNKLGQGRDAVKTLLEDNPELMEE
IENKIKAQIKGEDLEKPIPSQD

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=639662 LVD15_RS11475 WP_233780468.1 2680202..2681230(-) (recA) [Fulvivirga maritima strain SW1-E11]
ATGGCTGAAAAGGACGAAAAATTAAAGGCGCTTCAACTAACTATTGATAAACTGGAAAAAACCTTTGGTAAAGGTACGGT
GATGAAACTGAGCGATGAGCGGGTAGTAGATGTTCCGGCTATTTCCACAGGGTCACTCAGTCTTGATATAGCCTTAGGCG
TGGGAGGTATTCCCAGAGGTAGAGTAATAGAGATCTATGGTCCTGAATCATCAGGTAAGACCACACTATCTATGCATTGC
ATTGCCGAGGCACAAAAAAATGGCGGCTTAGCAGCATTTATAGATGCAGAGCATGCTTTTGACAGAGTTTATGCAGAAAA
ATTAGGAATAGATACTGAAAACTTATTGATATCACAACCTGATAGTGGTGAGCAAGCACTAGAAATTGCTGAGCACCTTA
TCCGTTCAGGTGCTATTGACATTATTGTGATTGACTCCGTAGCCGCTCTGGTACCTAAAGGTGAGCTAGAAGGTGAAATG
GGAGATAGCAAAATGGGTCTGCAAGCCAGACTGATGTCTCAAGCGCTAAGAAAACTGACAGGTACTATCAATAAAACAGG
TTGCTCTTGTATATTCATTAACCAGTTACGTGAAAAAATAGGCGTAATGTTTGGTAACCCTGAAACTACTACTGGTGGTA
ATGCTCTTAAATTCTACGCTTCTGTAAGAATGGATATCCGTAGAATAGGTCAGATTAAAGAAGGAGCCAATGATATTATT
GGTAACAGAACCAGAGTGAAAGTAGTGAAGAACAAAGTAGCGCCTCCTTTCAAAGTGGTTGAGTTTGACATTATGTATGG
AAAAGGTATTTCTAAAGTAGGTGAAGTGCTTGATCTTGGTGTAGAATTAGAGATTGTGAAGAAAGCAGGCTCATGGTTCT
CTTATGATGGCAATAAACTTGGTCAGGGTAGAGACGCTGTTAAAACGTTGTTAGAAGATAATCCTGAACTTATGGAAGAG
ATTGAAAACAAAATCAAAGCTCAGATTAAGGGTGAAGATTTAGAGAAACCCATTCCTTCTCAAGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

69.069

97.368

0.673
  recA Acinetobacter baylyi ADP1

66.154

95.029

0.629
  recA Acinetobacter baumannii D1279779

65.846

95.029

0.626
  recA Helicobacter pylori strain NCTC11637

61.696

100

0.617
  recA Helicobacter pylori 26695

61.404

100

0.614
  recA Ralstonia pseudosolanacearum GMI1000

67.308

91.228

0.614
  recA Neisseria gonorrhoeae MS11

63.58

94.737

0.602
  recA Neisseria gonorrhoeae MS11

63.58

94.737

0.602
  recA Neisseria gonorrhoeae strain FA1090

63.58

94.737

0.602
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

93.86

0.594
  recA Glaesserella parasuis strain SC1401

62.346

94.737

0.591
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.112

94.152

0.585
  recA Vibrio cholerae strain A1552

62.112

94.152

0.585
  recA Pseudomonas stutzeri DSM 10701

61.538

95.029

0.585
  recA Streptococcus mitis NCTC 12261

59.226

98.246

0.582
  recA Latilactobacillus sakei subsp. sakei 23K

58.529

99.415

0.582
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.3

94.444

0.579
  recA Streptococcus pyogenes NZ131

59.756

95.906

0.573
  recA Streptococcus mitis SK321

59.756

95.906

0.573
  recA Streptococcus pneumoniae TIGR4

58.333

98.246

0.573
  recA Streptococcus pneumoniae Rx1

58.333

98.246

0.573
  recA Streptococcus pneumoniae D39

58.333

98.246

0.573
  recA Streptococcus pneumoniae R6

58.333

98.246

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.385

95.029

0.564
  recA Streptococcus mutans UA159

58.716

95.614

0.561
  recA Lactococcus lactis subsp. cremoris KW2

59.077

95.029

0.561