Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LU301_RS07265 Genome accession   NZ_CP089978
Coordinates   1455443..1456549 (+) Length   368 a.a.
NCBI ID   WP_305269181.1    Uniprot ID   -
Organism   Moraxella sp. ZY210820     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1450443..1461549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LU301_RS07240 (LU301_07225) rlmE 1451447..1452097 (-) 651 WP_305269169.1 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE -
  LU301_RS07245 (LU301_07230) - 1452248..1452838 (-) 591 WP_305269172.1 5-formyltetrahydrofolate cyclo-ligase -
  LU301_RS07250 (LU301_07235) - 1452825..1454084 (-) 1260 WP_305269175.1 exonuclease SbcCD subunit D C-terminal domain-containing protein -
  LU301_RS07255 (LU301_07240) ruvC 1454109..1454651 (-) 543 WP_305269178.1 crossover junction endodeoxyribonuclease RuvC -
  LU301_RS07260 (LU301_07245) - 1454804..1455343 (+) 540 WP_305269180.1 FxsA family protein -
  LU301_RS07265 (LU301_07250) recA 1455443..1456549 (+) 1107 WP_305269181.1 recombinase RecA Machinery gene
  LU301_RS07270 (LU301_07255) - 1456739..1457227 (+) 489 WP_305269182.1 regulatory protein RecX -
  LU301_RS07275 (LU301_07260) - 1457232..1459844 (-) 2613 WP_305269183.1 DNA internalization-related competence protein ComEC/Rec2 -
  LU301_RS07280 (LU301_07265) lolD 1459848..1460531 (-) 684 WP_305269185.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 40233.60 Da        Isoelectric Point: 4.7414

>NTDB_id=639626 LU301_RS07265 WP_305269181.1 1455443..1456549(+) (recA) [Moraxella sp. ZY210820]
MDENKSKALNAALAQIEKNFGKNTIMRLGDNTVQPVESVSTGSLSLDIALGIGGLPKGRIIEIFGPESSGKTTLTLQIIA
QYQKQGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAVDLIVVDSVAALTPKAEIEGEMGD
SHMGLHARLMSQALRKITGNAKRSNCMVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGQVKDSDEIIGNE
TKVKVVKNKMAPPFKEAQFQILYGKGINYMGEVLDIATDYDIVKKSGAWYSYNGSKIGQGKNNVYRFFEENPEIFQTIEQ
QARQIALSQVAPPTAKDKKKDDNADESTDSSQDELLLDGDDFIPEDEF

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=639626 LU301_RS07265 WP_305269181.1 1455443..1456549(+) (recA) [Moraxella sp. ZY210820]
GTGGACGAAAATAAATCAAAAGCACTCAATGCAGCACTTGCACAGATTGAGAAAAATTTTGGTAAAAATACCATCATGCG
TTTAGGTGATAATACGGTACAACCTGTTGAATCAGTTTCTACAGGTTCATTATCATTAGATATTGCCTTAGGGATTGGTG
GTTTACCTAAAGGTCGTATTATTGAGATTTTTGGACCTGAAAGCTCTGGTAAAACGACACTCACATTACAAATTATTGCA
CAATATCAAAAACAAGGTGGTACTTGTGCCTTTATTGATGCTGAACATGCATTAGACCCACAATACGCACGCAAATTAGG
TGTTGATATTGATAATCTATTGGTTTCACAACCTGATAATGGCGAACAAGCCTTAGAAATTGCCGATATGTTGGTGCGTT
CTGGTGCAGTTGATTTAATTGTAGTAGACTCCGTGGCAGCATTAACCCCTAAAGCTGAAATTGAAGGCGAAATGGGGGAC
TCTCACATGGGCTTACACGCACGTTTGATGAGCCAAGCTTTGCGTAAAATTACAGGTAATGCAAAACGTTCAAATTGTAT
GGTGGTGTTTATTAACCAAATCCGTATGAAAATTGGTGTGATGTTTGGTAGCCCTGAAACTACAACAGGTGGTAATGCAC
TTAAATTCTATGCGTCAGTACGTTTAGATATTCGCCGTACAGGTCAAGTCAAAGACAGTGATGAAATAATCGGTAACGAA
ACTAAAGTGAAAGTCGTTAAAAACAAAATGGCTCCTCCATTTAAAGAAGCTCAATTCCAAATTTTATATGGAAAAGGCAT
TAATTACATGGGTGAAGTGCTTGATATTGCGACAGATTATGACATTGTGAAAAAATCTGGTGCGTGGTATTCATATAACG
GCTCAAAGATTGGTCAAGGCAAAAATAATGTATATCGTTTCTTTGAAGAAAATCCTGAAATTTTCCAAACTATTGAACAA
CAAGCACGTCAAATCGCATTAAGCCAAGTTGCACCACCGACTGCTAAAGATAAGAAAAAAGATGATAATGCTGATGAATC
AACAGATTCTTCACAAGATGAATTATTATTGGACGGTGATGATTTTATCCCTGAAGATGAATTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

85.366

89.13

0.761
  recA Acinetobacter baylyi ADP1

80.87

93.75

0.758
  recA Glaesserella parasuis strain SC1401

69.859

96.467

0.674
  recA Pseudomonas stutzeri DSM 10701

72.434

92.663

0.671
  recA Vibrio cholerae strain A1552

73.171

89.13

0.652
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.171

89.13

0.652
  recA Neisseria gonorrhoeae MS11

69.018

88.587

0.611
  recA Neisseria gonorrhoeae MS11

69.018

88.587

0.611
  recA Neisseria gonorrhoeae strain FA1090

69.018

88.587

0.611
  recA Ralstonia pseudosolanacearum GMI1000

71.197

83.967

0.598
  recA Streptococcus mitis NCTC 12261

59.229

98.641

0.584
  recA Streptococcus mitis SK321

59.229

98.641

0.584
  recA Streptococcus pneumoniae TIGR4

58.583

99.728

0.584
  recA Streptococcus pneumoniae Rx1

58.583

99.728

0.584
  recA Streptococcus pneumoniae D39

58.583

99.728

0.584
  recA Streptococcus pneumoniae R6

58.583

99.728

0.584
  recA Streptococcus mutans UA159

58.311

99.728

0.582
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.742

89.402

0.579
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.144

86.685

0.573
  recA Helicobacter pylori 26695

62.769

88.315

0.554
  recA Helicobacter pylori strain NCTC11637

62.462

88.315

0.552
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

87.228

0.543
  recA Streptococcus pyogenes NZ131

60.923

88.315

0.538
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.83

86.141

0.533
  recA Latilactobacillus sakei subsp. sakei 23K

55.556

95.38

0.53
  recA Lactococcus lactis subsp. cremoris KW2

59.133

87.772

0.519