Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LU604_RS16180 Genome accession   NZ_CP089942
Coordinates   3035064..3036131 (-) Length   355 a.a.
NCBI ID   WP_016193112.1    Uniprot ID   A0A0M2KBI9
Organism   Erwinia tracheiphila strain MDCuke     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3030064..3041131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LU604_RS16165 (LU604_16165) csrA 3031221..3031406 (-) 186 WP_016193109.1 carbon storage regulator CsrA -
  LU604_RS16170 (LU604_16170) alaS 3031656..3034283 (-) 2628 WP_233478781.1 alanine--tRNA ligase -
  LU604_RS16175 (LU604_16175) - 3034422..3034928 (-) 507 WP_016193111.1 regulatory protein RecX -
  LU604_RS16180 (LU604_16180) recA 3035064..3036131 (-) 1068 WP_016193112.1 recombinase RecA Machinery gene
  LU604_RS16185 (LU604_16185) pncC 3036227..3036721 (-) 495 WP_016193113.1 nicotinamide-nucleotide amidase -
  LU604_RS16190 (LU604_16190) mltB 3037392..3038471 (-) 1080 WP_233478782.1 lytic murein transglycosylase B -
  LU604_RS16195 (LU604_16195) - 3038681..3039271 (+) 591 WP_233480816.1 DJ-1 family glyoxalase III -
  LU604_RS16200 (LU604_16200) - 3039441..3040649 (+) 1209 WP_233481340.1 IS256 family transposase -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 37913.40 Da        Isoelectric Point: 5.0427

>NTDB_id=639291 LU604_RS16180 WP_016193112.1 3035064..3036131(-) (recA) [Erwinia tracheiphila strain MDCuke]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRTMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVG
SETRVKVVKNKVAAPFKQAEFQIMYGEGINVLGELVDLGVKHKLIEKAGAWYSYNGDKIGQGKANAGNFLKENPAIASEI
ESKLRAMLLNNPDSKPDFSADDADSHPISEADESF

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=639291 LU604_RS16180 WP_016193112.1 3035064..3036131(-) (recA) [Erwinia tracheiphila strain MDCuke]
ATGGCTATTGACGAAAACAAGCAAAAAGCACTGGCAGCCGCGCTGGGCCAGATTGAAAAGCAATTTGGTAAAGGCTCTAT
CATGCGTCTGGGCGAAGATCGCACTATGGATGTGGAAACCATATCTACGGGTTCTCTCTCGCTGGATATTGCGTTGGGCG
CAGGCGGGCTTCCCATGGGCCGTATTGTTGAAATTTATGGACCTGAATCTTCTGGTAAAACCACGCTGACTTTGCAGGTT
ATCGCTGCCGCCCAGCGTAAGGGAAAAACCTGTGCATTTATTGATGCCGAACATGCGTTGGATCCGGTTTACGCGAAGAA
ACTCGGTGTTGATATTGATAATCTGCTGTGCTCCCAGCCTGATACGGGTGAGCAGGCTCTGGAAATCTGTGATGCGCTGG
CTCGATCTGGGGCTGTCGACGTCATTATTGTCGACTCCGTCGCTGCGCTAACGCCTAAAGCCGAAATTGAAGGCGAAATT
GGCGACTCGCACATGGGGCTGGCAGCACGCATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAACAGTCCAA
CACACTATTGATTTTTATTAACCAGATTCGTATGAAAATTGGTGTGATGTTCGGAAATCCGGAAACCACTACGGGTGGTA
ATGCCCTGAAGTTTTATGCTTCTGTTCGTCTTGATATCCGTCGTATCGGCGCGATTAAAGAGGGAGATGAAGTGGTGGGC
AGCGAAACTCGGGTAAAAGTGGTGAAAAACAAAGTTGCTGCACCCTTTAAACAAGCTGAATTCCAGATCATGTATGGTGA
AGGCATCAACGTTCTGGGTGAGCTGGTAGATCTCGGTGTCAAACACAAACTGATTGAAAAGGCCGGCGCCTGGTATAGCT
ATAACGGTGACAAAATTGGTCAGGGTAAAGCCAATGCGGGTAATTTCCTGAAAGAAAATCCGGCGATTGCCAGTGAAATA
GAAAGTAAATTACGCGCTATGCTGCTAAACAATCCAGACAGTAAGCCCGATTTCTCTGCTGATGATGCAGATAGCCATCC
CATCAGCGAAGCAGATGAGAGCTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M2KBI9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

81.534

99.155

0.808
  recA Vibrio cholerae O1 biovar El Tor strain E7946

81.534

99.155

0.808
  recA Pseudomonas stutzeri DSM 10701

73.9

96.056

0.71
  recA Acinetobacter baylyi ADP1

71.014

97.183

0.69
  recA Acinetobacter baumannii D1279779

74.312

92.113

0.685
  recA Glaesserella parasuis strain SC1401

71.176

95.775

0.682
  recA Neisseria gonorrhoeae MS11

69.325

91.831

0.637
  recA Neisseria gonorrhoeae MS11

69.325

91.831

0.637
  recA Neisseria gonorrhoeae strain FA1090

69.325

91.831

0.637
  recA Ralstonia pseudosolanacearum GMI1000

70.476

88.732

0.625
  recA Helicobacter pylori strain NCTC11637

61.721

94.93

0.586
  recA Helicobacter pylori 26695

61.424

94.93

0.583
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.95

89.859

0.575
  recA Streptococcus pneumoniae Rx1

62.963

91.268

0.575
  recA Streptococcus pneumoniae TIGR4

62.963

91.268

0.575
  recA Streptococcus pneumoniae R6

62.963

91.268

0.575
  recA Streptococcus pneumoniae D39

62.963

91.268

0.575
  recA Bacillus subtilis subsp. subtilis str. 168

63.438

90.141

0.572
  recA Streptococcus mutans UA159

62.462

91.549

0.572
  recA Streptococcus mitis NCTC 12261

62.27

91.831

0.572
  recA Lactococcus lactis subsp. cremoris KW2

62.346

91.268

0.569
  recA Streptococcus pyogenes NZ131

62.154

91.549

0.569
  recA Streptococcus mitis SK321

61.963

91.831

0.569
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.542

93.521

0.566
  recA Latilactobacillus sakei subsp. sakei 23K

61.656

91.831

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60

91.549

0.549