Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LVE68_RS03830 Genome accession   NZ_CP089928
Coordinates   861453..862487 (-) Length   344 a.a.
NCBI ID   WP_233005709.1    Uniprot ID   -
Organism   Microbulbifer sp. YPW16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 856453..867487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVE68_RS03800 (LVE68_03800) - 856641..857000 (-) 360 WP_233005703.1 histidine triad nucleotide-binding protein -
  LVE68_RS03805 (LVE68_03805) - 857004..857189 (-) 186 WP_233005704.1 Trm112 family protein -
  LVE68_RS03810 (LVE68_03810) - 857303..858142 (-) 840 WP_233005705.1 alpha/beta hydrolase -
  LVE68_RS03815 (LVE68_03815) - 858288..859307 (-) 1020 WP_233005706.1 class I fructose-bisphosphate aldolase -
  LVE68_RS03820 (LVE68_03820) glpK 859407..860885 (-) 1479 WP_233005707.1 glycerol kinase GlpK -
  LVE68_RS03825 (LVE68_03825) - 860926..861405 (-) 480 WP_233005708.1 regulatory protein RecX -
  LVE68_RS03830 (LVE68_03830) recA 861453..862487 (-) 1035 WP_233005709.1 recombinase RecA Machinery gene
  LVE68_RS03835 (LVE68_03835) - 862563..863072 (-) 510 WP_233005710.1 CinA family protein -
  LVE68_RS03840 (LVE68_03840) mutS 863164..865791 (+) 2628 WP_233005711.1 DNA mismatch repair protein MutS -
  LVE68_RS03845 (LVE68_03845) fdxA 865915..866238 (+) 324 WP_233005712.1 ferredoxin FdxA -
  LVE68_RS03850 (LVE68_03850) - 866502..866669 (+) 168 WP_233005713.1 DUF1328 family protein -
  LVE68_RS18205 - 867083..867394 (+) 312 Protein_748 hypothetical protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37064.39 Da        Isoelectric Point: 5.1660

>NTDB_id=639173 LVE68_RS03830 WP_233005709.1 861453..862487(-) (recA) [Microbulbifer sp. YPW16]
MDSNKDKALQAALSQIERQFGKGTVMRMGDKERVQIPAISTGSLGLDVALGIGGLPRGRIVEIYGPESSGKTTLTLQVIA
EAQRKGGTCAFVDAEHALDPIYAEKLGVNVDELIVSQPDTGEQALEVADMLVRSGAVDVLIVDSVAALTPRAEIEGEMGD
SHVGLQARLMSQALRKLTGNIKNTNTLCVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVKEGDEVVGNE
TRVKVVKNKVAPPFKQTEFQIMYGQGINLLGEIIDYGVKHGLVDKAGAWYSYKGDKIGQGKANAVKFLKENQGIRDEIEG
QLRAQLLGDLVPAQPEEAVESPEE

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=639173 LVE68_RS03830 WP_233005709.1 861453..862487(-) (recA) [Microbulbifer sp. YPW16]
ATGGATTCCAATAAAGACAAGGCATTGCAGGCGGCGCTGTCTCAGATCGAGCGCCAGTTCGGCAAGGGTACCGTTATGCG
TATGGGGGACAAGGAGCGTGTGCAGATTCCCGCGATCTCCACCGGTTCCCTGGGCCTGGACGTGGCCCTCGGCATTGGCG
GCCTGCCCCGCGGCCGTATCGTGGAAATCTACGGCCCGGAGTCTTCCGGTAAGACCACCCTGACCCTGCAGGTCATCGCC
GAGGCGCAGCGCAAGGGCGGCACCTGTGCGTTCGTGGACGCCGAGCACGCGCTGGACCCCATCTACGCCGAGAAGCTGGG
CGTGAACGTCGACGAGCTGATCGTCTCCCAGCCGGATACCGGCGAACAGGCCCTGGAAGTGGCCGACATGCTGGTGCGCT
CCGGCGCGGTGGATGTCCTGATCGTCGACTCGGTAGCGGCCCTGACCCCGCGCGCCGAGATCGAGGGCGAGATGGGCGAT
TCCCACGTGGGCCTGCAGGCACGCCTGATGTCCCAGGCCCTGCGCAAGCTGACCGGTAACATCAAGAACACCAACACCCT
GTGCGTGTTCATTAACCAGATCCGCATGAAGATCGGTGTGATGTTCGGCTCCCCCGAGACCACCACCGGTGGTAACGCGC
TCAAGTTTTACTCCTCGGTACGCCTGGATATTCGCCGCATCGGCTCGGTGAAAGAGGGCGATGAGGTGGTCGGCAACGAG
ACCCGGGTGAAGGTGGTGAAAAACAAGGTGGCGCCGCCGTTCAAGCAGACCGAGTTCCAGATCATGTACGGCCAGGGTAT
CAACCTGCTTGGCGAGATCATCGACTACGGCGTCAAGCATGGGCTGGTGGACAAGGCCGGTGCCTGGTACAGCTACAAGG
GTGACAAGATCGGCCAGGGCAAGGCCAACGCGGTCAAGTTCCTGAAGGAAAACCAGGGTATCCGCGATGAGATCGAGGGC
CAGCTGCGCGCCCAGCTGCTGGGTGACCTGGTTCCCGCACAGCCGGAAGAGGCGGTGGAGTCCCCGGAAGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

81.04

95.058

0.77
  recA Vibrio cholerae strain A1552

74.312

95.058

0.706
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.312

95.058

0.706
  recA Acinetobacter baylyi ADP1

74.006

95.058

0.703
  recA Acinetobacter baumannii D1279779

74.006

95.058

0.703
  recA Neisseria gonorrhoeae MS11

72.308

94.477

0.683
  recA Neisseria gonorrhoeae MS11

72.308

94.477

0.683
  recA Neisseria gonorrhoeae strain FA1090

72.308

94.477

0.683
  recA Glaesserella parasuis strain SC1401

72.05

93.605

0.674
  recA Ralstonia pseudosolanacearum GMI1000

72.669

90.407

0.657
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.398

92.733

0.625
  recA Helicobacter pylori 26695

60.983

100

0.613
  recA Helicobacter pylori strain NCTC11637

60.983

100

0.613
  recA Bacillus subtilis subsp. subtilis str. 168

64.486

93.314

0.602
  recA Latilactobacillus sakei subsp. sakei 23K

60.117

99.128

0.596
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.631

96.221

0.593
  recA Streptococcus mutans UA159

60

94.477

0.567
  recA Streptococcus pneumoniae D39

59.451

95.349

0.567
  recA Streptococcus mitis NCTC 12261

59.451

95.349

0.567
  recA Streptococcus pneumoniae Rx1

59.451

95.349

0.567
  recA Streptococcus pneumoniae R6

59.451

95.349

0.567
  recA Streptococcus pneumoniae TIGR4

59.451

95.349

0.567
  recA Streptococcus mitis SK321

58.841

95.349

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.077

94.477

0.558
  recA Streptococcus pyogenes NZ131

58.333

94.186

0.549
  recA Lactococcus lactis subsp. cremoris KW2

57.362

94.767

0.544