Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LVB87_RS10395 Genome accession   NZ_CP089925
Coordinates   2137153..2138196 (+) Length   347 a.a.
NCBI ID   WP_232897901.1    Uniprot ID   -
Organism   Lysobacter sp. KIS68-7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2132153..2143196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVB87_RS10370 (LVB87_10370) rplS 2132165..2132572 (+) 408 WP_232897896.1 50S ribosomal protein L19 -
  LVB87_RS10375 (LVB87_10375) - 2132666..2133088 (+) 423 WP_232897897.1 RNA-binding S4 domain-containing protein -
  LVB87_RS10380 (LVB87_10380) mutS 2133093..2135630 (-) 2538 WP_232897898.1 DNA mismatch repair protein MutS -
  LVB87_RS10385 (LVB87_10385) - 2135792..2136289 (+) 498 WP_232897899.1 CinA family protein -
  LVB87_RS10390 (LVB87_10390) lexA 2136333..2136968 (+) 636 WP_232897900.1 transcriptional repressor LexA -
  LVB87_RS10395 (LVB87_10395) recA 2137153..2138196 (+) 1044 WP_232897901.1 recombinase RecA Machinery gene
  LVB87_RS10400 (LVB87_10400) recX 2138300..2138770 (+) 471 Protein_2038 recombination regulator RecX -
  LVB87_RS10405 (LVB87_10405) alaS 2138961..2141627 (+) 2667 WP_232897902.1 alanine--tRNA ligase -
  LVB87_RS10410 (LVB87_10410) csrA 2141770..2141979 (+) 210 WP_232897903.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37380.10 Da        Isoelectric Point: 6.1406

>NTDB_id=639139 LVB87_RS10395 WP_232897901.1 2137153..2138196(+) (recA) [Lysobacter sp. KIS68-7]
MDENKKRALSAALGQIEKQFGKGSVMRMGDKSVEPAEVIGTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQTIA
QCQKAGGTAAFIDAEHALDPIYAQKLGVNIDDLLVSQPDTGEQALEIADMLVRSAAVDMVVIDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNCMVIFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGSVKKGDEIIG
NETRIKVVKNKMAPPFKQVITEILYGEGISREGELIEMGVNAKLVEKSGAWYSAYDERIGQGKENARTFLKENPQVAARL
EAELRAKLAPAPQPQEPKRDASESTEA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=639139 LVB87_RS10395 WP_232897901.1 2137153..2138196(+) (recA) [Lysobacter sp. KIS68-7]
ATGGACGAGAACAAGAAGCGCGCCCTCTCCGCCGCCCTCGGGCAGATCGAAAAGCAGTTCGGCAAGGGCTCGGTGATGCG
GATGGGCGACAAGAGCGTGGAGCCCGCCGAGGTCATCGGCACCGGCTCGCTCATGCTCGACATCGCGCTGGGCATCGGCG
GCCTGCCCAAGGGGCGTGTCGTCGAAATCTATGGTCCTGAGTCCTCGGGCAAGACCACGCTGACGCTGCAGACCATCGCG
CAATGCCAGAAGGCGGGCGGCACCGCGGCCTTCATCGACGCCGAACACGCGCTCGACCCGATCTACGCGCAGAAGCTGGG
CGTCAACATCGACGACCTGCTGGTCTCGCAGCCCGACACCGGCGAGCAGGCGCTGGAAATCGCCGACATGCTGGTGCGTT
CCGCCGCGGTGGACATGGTGGTGATCGACTCCGTCGCGGCGCTCACGCCCAAGGCGGAAATCGAAGGCGAAATGGGCGAC
CAGCTCCCCGGCCTGCAGGCACGCCTCATGAGCCAGGCGCTGCGCAAGCTCACCGGCAACATCAAGCGCAGCAACTGCAT
GGTCATCTTCATCAACCAGCTGCGCATGAAGATCGGCGTGATGATGCCGGGCCAGAGCCCGGAAACCACGACGGGCGGCA
ACGCGCTCAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATCGGCTCGGTCAAGAAGGGCGACGAGATCATCGGC
AACGAAACGCGCATCAAGGTCGTCAAGAATAAGATGGCGCCGCCGTTCAAGCAGGTCATCACCGAAATCCTCTACGGCGA
AGGCATCAGCCGCGAAGGCGAGCTGATCGAGATGGGCGTCAACGCCAAGCTCGTGGAGAAGTCGGGTGCCTGGTACAGCG
CCTACGACGAACGCATCGGGCAGGGCAAGGAAAACGCCCGCACGTTCCTCAAGGAGAACCCGCAGGTGGCTGCGCGCCTG
GAAGCGGAACTGCGCGCGAAGCTCGCGCCGGCGCCGCAGCCGCAGGAACCCAAGCGCGATGCCTCGGAAAGCACCGAAGC
CTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

71.429

98.847

0.706
  recA Pseudomonas stutzeri DSM 10701

73.78

94.524

0.697
  recA Acinetobacter baumannii D1279779

72.866

94.524

0.689
  recA Vibrio cholerae strain A1552

72.256

94.524

0.683
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.256

94.524

0.683
  recA Ralstonia pseudosolanacearum GMI1000

74.763

91.354

0.683
  recA Glaesserella parasuis strain SC1401

68.58

95.389

0.654
  recA Neisseria gonorrhoeae MS11

67.89

94.236

0.64
  recA Neisseria gonorrhoeae MS11

67.89

94.236

0.64
  recA Neisseria gonorrhoeae strain FA1090

67.89

94.236

0.64
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.877

91.354

0.611
  recA Helicobacter pylori 26695

60.997

98.271

0.599
  recA Helicobacter pylori strain NCTC11637

60.704

98.271

0.597
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.862

95.965

0.594
  recA Bacillus subtilis subsp. subtilis str. 168

62.733

92.795

0.582
  recA Streptococcus pneumoniae R6

56.657

100

0.576
  recA Streptococcus pneumoniae TIGR4

56.657

100

0.576
  recA Streptococcus pneumoniae Rx1

56.657

100

0.576
  recA Streptococcus pneumoniae D39

56.657

100

0.576
  recA Streptococcus mitis SK321

57.895

98.559

0.571
  recA Latilactobacillus sakei subsp. sakei 23K

59.281

96.254

0.571
  recA Lactococcus lactis subsp. cremoris KW2

60.061

94.524

0.568
  recA Streptococcus mutans UA159

56.322

100

0.565
  recA Streptococcus mitis NCTC 12261

57.31

98.559

0.565
  recA Streptococcus pyogenes NZ131

58.182

95.101

0.553
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.182

95.101

0.553