Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LVB77_RS14065 Genome accession   NZ_CP089924
Coordinates   3114001..3115038 (-) Length   345 a.a.
NCBI ID   WP_232906716.1    Uniprot ID   -
Organism   Lysobacter sp. 5GHs7-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3109001..3120038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVB77_RS14050 (LVB77_14050) csrA 3110235..3110438 (-) 204 WP_055899964.1 carbon storage regulator CsrA -
  LVB77_RS14055 (LVB77_14055) alaS 3110595..3113228 (-) 2634 WP_232906714.1 alanine--tRNA ligase -
  LVB77_RS14060 (LVB77_14060) recX 3113400..3113942 (-) 543 WP_232906715.1 recombination regulator RecX -
  LVB77_RS14065 (LVB77_14065) recA 3114001..3115038 (-) 1038 WP_232906716.1 recombinase RecA Machinery gene
  LVB77_RS14070 (LVB77_14070) lexA 3115270..3115917 (-) 648 WP_232906717.1 transcriptional repressor LexA -
  LVB77_RS14075 (LVB77_14075) - 3116033..3116974 (+) 942 WP_232906718.1 bifunctional helix-turn-helix transcriptional regulator/GNAT family N-acetyltransferase -
  LVB77_RS14080 (LVB77_14080) - 3116997..3117494 (-) 498 WP_232906719.1 CinA family protein -
  LVB77_RS14085 (LVB77_14085) - 3117801..3118019 (+) 219 WP_232906720.1 hypothetical protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37027.56 Da        Isoelectric Point: 5.0813

>NTDB_id=639108 LVB77_RS14065 WP_232906716.1 3114001..3115038(-) (recA) [Lysobacter sp. 5GHs7-4]
MDENKKRALSAALGQIEKQFGKGSVMRMGDRAVEAAEVIGTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
QCQKNGGTAAFIDAEHALDPIYAAKLGVNIDDLLVSQPDTGEQALEIADMLVRSAAVDMVVVDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNTLVIFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTKIKVVKNKMAPPFKQVVTEILYGEGISREGELIDMGVEAKLVEKSGAWYSCGDERIGQGKENARQYLKENPEVATRL
EAALREKFVPAEAKRDEAGEDGAED

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=639108 LVB77_RS14065 WP_232906716.1 3114001..3115038(-) (recA) [Lysobacter sp. 5GHs7-4]
ATGGACGAGAACAAGAAGCGCGCCCTGTCGGCCGCCCTGGGCCAGATCGAGAAGCAGTTCGGCAAGGGCTCGGTGATGCG
CATGGGCGACCGTGCGGTCGAAGCCGCCGAGGTCATCGGCACCGGTTCGCTGATGCTCGACATCGCGCTCGGCATCGGCG
GCCTGCCTAAGGGGCGCGTGGTCGAGATCTACGGTCCGGAATCCTCGGGCAAGACCACCCTGACCCTGCAGGCCATCGCC
CAGTGCCAGAAGAACGGCGGCACCGCCGCCTTCATCGACGCCGAGCACGCCCTGGACCCGATCTACGCGGCCAAGCTGGG
CGTCAACATCGACGACCTGCTGGTCTCGCAGCCCGACACCGGCGAGCAGGCGCTGGAAATCGCCGACATGCTGGTGCGTT
CGGCGGCGGTGGATATGGTCGTGGTCGACTCGGTCGCCGCGCTGACCCCCAAGGCCGAAATCGAAGGCGAAATGGGCGAC
CAGCTGCCGGGCCTGCAGGCGCGTCTGATGTCGCAGGCGCTGCGCAAGCTGACCGGCAACATCAAGCGCTCCAACACCCT
GGTGATCTTCATCAACCAGCTGCGCATGAAGATCGGCGTGATGATGCCGGGCCAGAGCCCGGAAACCACCACCGGCGGCA
ACGCGCTCAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATCGGCGCGATCAAGAAGGGCGACGAGATCATCGGC
AACCAGACCAAGATCAAGGTCGTCAAGAACAAGATGGCGCCCCCGTTCAAGCAGGTCGTCACCGAAATCCTCTACGGCGA
AGGCATCTCGCGCGAGGGCGAACTGATCGACATGGGCGTGGAAGCCAAGCTGGTCGAGAAGTCGGGCGCCTGGTACAGCT
GCGGCGACGAGCGTATCGGCCAGGGCAAGGAAAACGCACGCCAGTACCTCAAGGAAAACCCCGAGGTCGCCACGCGCCTC
GAAGCCGCGCTGCGCGAGAAGTTCGTGCCGGCCGAGGCCAAGCGCGACGAAGCCGGCGAGGACGGCGCGGAAGATTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

71.676

100

0.719
  recA Acinetobacter baylyi ADP1

70.725

100

0.707
  recA Vibrio cholerae strain A1552

72.289

96.232

0.696
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.289

96.232

0.696
  recA Acinetobacter baumannii D1279779

72.644

95.362

0.693
  recA Ralstonia pseudosolanacearum GMI1000

75.08

90.725

0.681
  recA Neisseria gonorrhoeae MS11

69.325

94.493

0.655
  recA Neisseria gonorrhoeae MS11

69.325

94.493

0.655
  recA Neisseria gonorrhoeae strain FA1090

69.325

94.493

0.655
  recA Glaesserella parasuis strain SC1401

69.35

93.623

0.649
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.154

94.203

0.623
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.363

96.522

0.612
  recA Helicobacter pylori strain NCTC11637

63.72

95.072

0.606
  recA Streptococcus mitis SK321

60.116

100

0.603
  recA Streptococcus mitis NCTC 12261

60.116

100

0.603
  recA Helicobacter pylori 26695

63.415

95.072

0.603
  recA Bacillus subtilis subsp. subtilis str. 168

63.692

94.203

0.6
  recA Streptococcus pneumoniae Rx1

62.5

95.072

0.594
  recA Streptococcus pneumoniae D39

62.5

95.072

0.594
  recA Streptococcus pneumoniae R6

62.5

95.072

0.594
  recA Streptococcus pneumoniae TIGR4

62.5

95.072

0.594
  recA Latilactobacillus sakei subsp. sakei 23K

61.078

96.812

0.591
  recA Streptococcus mutans UA159

60.909

95.652

0.583
  recA Streptococcus pyogenes NZ131

60.606

95.652

0.58
  recA Lactococcus lactis subsp. cremoris KW2

60.923

94.203

0.574
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.756

95.072

0.568