Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LSG25_RS03870 Genome accession   NZ_CP089848
Coordinates   837670..838752 (-) Length   360 a.a.
NCBI ID   WP_232743400.1    Uniprot ID   -
Organism   Paralcaligenes sp. KSB-10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 832670..843752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSG25_RS03855 (LSG25_03855) - 832869..835589 (+) 2721 WP_232743397.1 nitrate reductase -
  LSG25_RS03860 (LSG25_03860) cobA 835586..836386 (+) 801 WP_232743398.1 uroporphyrinogen-III C-methyltransferase -
  LSG25_RS03865 (LSG25_03865) recX 837062..837580 (-) 519 WP_232743399.1 recombination regulator RecX -
  LSG25_RS03870 (LSG25_03870) recA 837670..838752 (-) 1083 WP_232743400.1 recombinase RecA Machinery gene
  LSG25_RS03875 (LSG25_03875) - 838958..839647 (+) 690 WP_232743401.1 response regulator transcription factor -
  LSG25_RS03880 (LSG25_03880) - 839715..841151 (+) 1437 WP_232743402.1 sensor histidine kinase -
  LSG25_RS03885 (LSG25_03885) - 841223..842848 (+) 1626 WP_232744554.1 MFS transporter -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 38529.00 Da        Isoelectric Point: 4.9628

>NTDB_id=638865 LSG25_RS03870 WP_232743400.1 837670..838752(-) (recA) [Paralcaligenes sp. KSB-10]
MDDKNSKAATAERAKALAAALSQIDKQFGKGSVMRYGDNKVEHDIQVVSTGSLGLDIALGVGGLPRGRVIEVYGPESSGK
TTLTLQVIAEMQKVGGTCAFIDAEHALDVQYASKLGVNLADLLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALVPK
AEIEGDMGDSLPGLQARLMSQALRKLTASINRTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIK
KGDEVVGNETRVKVVKNKVAPPFKQAEFDIMYGSGISREGEIVDLGVQADIVDKAGAWFSYGGTRIGQGKDNVREYLKEH
PDMALEIENRVREQLGVIAKAAVVVREPANAVEAEAEADE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=638865 LSG25_RS03870 WP_232743400.1 837670..838752(-) (recA) [Paralcaligenes sp. KSB-10]
ATGGACGACAAAAATAGCAAAGCCGCTACCGCCGAGCGCGCCAAAGCACTTGCTGCCGCCTTATCGCAAATCGACAAGCA
GTTCGGCAAAGGTTCCGTCATGCGCTATGGCGACAACAAGGTCGAACACGATATCCAGGTGGTTTCCACGGGTTCGCTGG
GCCTTGACATCGCCCTGGGCGTAGGTGGCTTGCCGCGCGGTCGTGTCATCGAGGTCTACGGCCCCGAATCGTCCGGTAAA
ACCACACTGACCCTGCAAGTCATTGCCGAGATGCAAAAAGTGGGCGGTACCTGCGCTTTTATCGATGCCGAGCACGCGCT
CGACGTTCAGTATGCCTCCAAGCTGGGTGTCAACCTGGCCGATCTGCTCATTTCACAACCCGATACAGGCGAGCAGGCTC
TTGAAATCACCGATGCGCTCGTGCGTTCGGGTTCGGTCGATCTCATCGTCATCGACTCGGTGGCGGCGCTTGTGCCCAAA
GCCGAAATCGAGGGCGACATGGGCGATTCGCTTCCCGGCCTGCAGGCTCGCCTTATGAGCCAGGCTTTGCGCAAGCTTAC
GGCCAGTATCAACCGAACGAATTGCATGGTTATTTTCATCAATCAAATCCGCATGAAAATCGGCGTCATGTTCGGTAATC
CCGAAACCACCACAGGCGGCAATGCGCTCAAGTTTTATTCTTCGGTTCGGCTCGATATCCGCCGTATCGGCGCCATTAAG
AAGGGCGACGAAGTCGTGGGTAATGAAACCCGCGTCAAAGTGGTCAAGAACAAGGTGGCCCCGCCATTCAAGCAGGCCGA
GTTCGATATCATGTACGGCAGCGGCATTTCACGCGAAGGCGAAATCGTCGACCTGGGTGTCCAGGCCGATATCGTCGACA
AGGCCGGCGCCTGGTTCAGCTACGGTGGCACGCGCATCGGCCAGGGCAAGGACAATGTGCGCGAATATCTTAAAGAGCAT
CCCGACATGGCTCTTGAAATCGAAAACAGGGTACGTGAACAACTGGGCGTGATAGCCAAGGCTGCCGTAGTGGTAAGGGA
GCCCGCCAACGCTGTCGAGGCGGAAGCCGAAGCCGACGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

78.902

96.111

0.758
  recA Pseudomonas stutzeri DSM 10701

70.145

95.833

0.672
  recA Acinetobacter baumannii D1279779

73.375

89.722

0.658
  recA Acinetobacter baylyi ADP1

72.446

89.722

0.65
  recA Neisseria gonorrhoeae MS11

70.552

90.556

0.639
  recA Neisseria gonorrhoeae MS11

70.552

90.556

0.639
  recA Neisseria gonorrhoeae strain FA1090

70.552

90.556

0.639
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.588

89.722

0.633
  recA Vibrio cholerae strain A1552

70.588

89.722

0.633
  recA Glaesserella parasuis strain SC1401

69.753

90

0.628
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.173

91.389

0.614
  recA Bacillus subtilis subsp. subtilis str. 168

66.055

90.833

0.6
  recA Helicobacter pylori strain NCTC11637

61.383

96.389

0.592
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.337

90.556

0.592
  recA Helicobacter pylori 26695

61.095

96.389

0.589
  recA Latilactobacillus sakei subsp. sakei 23K

63.83

91.389

0.583
  recA Streptococcus pneumoniae Rx1

62.018

93.611

0.581
  recA Streptococcus pneumoniae D39

62.018

93.611

0.581
  recA Streptococcus pneumoniae R6

62.018

93.611

0.581
  recA Streptococcus pneumoniae TIGR4

62.018

93.611

0.581
  recA Streptococcus mitis SK321

61.176

94.444

0.578
  recA Streptococcus mitis NCTC 12261

61.176

94.444

0.578
  recA Streptococcus pyogenes NZ131

62.614

91.389

0.572
  recA Streptococcus mutans UA159

57.79

98.056

0.567
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.24

89.167

0.564
  recA Lactococcus lactis subsp. cremoris KW2

58.235

94.444

0.55